Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq2232 95.1 1e-14 >seq2232 Length=20840 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || |||| || |||| || | |||||| || ||||| Sbjct 550 CTCCTTCTGGATGTTGTAGTCAGAGAGAGAACGGCCGTCTTCCAACTGCTTACCAGCGAA 609 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | || || ||||| | || | || |||||||| |||||| | ||| | | Sbjct 610 AATGAGACGTTGTTGGTCTGGAGGRATGCCTTCCTTGTCTTGGATCTTTTGCTTTACATT 669 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || ||||| || || | |||||||||||||| || || || || || Sbjct 670 TTCGATAGAATCAGATGATTCAACCTCTAAGGTGATGGTTTTGCCAGTAAGAGTCTTGAC 729 Query 46582 AAAGATTTGCAT 46593 |||||||||||| Sbjct 730 AAAGATTTGCAT 741 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 || ||||||||||||||||| || |||| || | || || | || || || || || Sbjct 779 TCTTTTTGGATATTGTAGTCAGAAAGAGAACGGCCATCTTCTAATTGTTTACCAGCAAAG 838 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | || || ||||| | || | | |||||||| |||||| | ||||| || Sbjct 839 ATAAGACGTTGTTGGTCTGGGGGGATACCTTCCTTGTCTTGGATCTTTTGCTTGACGTTC 898 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | | |||| ||||| || |||| |||||||| || || || || || ||||| Sbjct 899 TCAATGGAGTCGGAGGATTCGACTTCCAAAGTGATGGTCTTACCAGTGAGGGTCTTAACG 958 Query 46583 AAGATTTGCATTTT 46596 || |||||||| || Sbjct 959 AAAATTTGCATGTT 972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565218517739280