Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2232 105 7e-18 seq2078 105 7e-18 seq2381 93.3 4e-14 >seq2232 Length=20840 Score = 105 bits (116), Expect = 7e-18 Identities = 156/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || || || ||||||||||||||| | || || || | | Sbjct 741 ATGCAAATCTTTGTCAAGACTCTTACTGGCAAAACCATCACCTTAGAGGTTGAATCATCT 682 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | ||| | ||||| |||| |||| ||||| || || || || | |||| Sbjct 681 GATTCTATCGAAAATG--TAAAGCAAAAGATCCAAGACAAGGAAGGCATYCCTCCAGACC 624 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 |||| || ||||||| ||| || || ||| |||| |||| || | ||| ||||||| Sbjct 623 AACAACGTCTCATTTTCGCTGGTAAGCAGTTGGAAGACGGCCGTTCTCTCTCTGACTACA 564 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||| ||||| | || || || ||||| || ||| Sbjct 563 ACATCCAGAAGGAGTCCACTCTTCACTTGGTCCTTCGT 526 >seq2078 Length=27221 Score = 105 bits (116), Expect = 7e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || ||||| |||||||| ||||| | || ||||| || | Sbjct 1284 ATGCAAATCTTTGTGAAGACACTCACAGGCAAAACAATCACACTAGAAGTCGAATCCTCT 1225 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | ||||| | || |||| || | || ||||| || ||||| | ||||| Sbjct 1224 GATTCTATTGAAAACG-TCAAGCAAAAGATTCAAGATAAAGAAGGTATTCCACCAGACCA 1166 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| || |||| || |||||||| | || || | ||| | || |||||||| Sbjct 1165 ACAGCGTCTTATTTTTGCCGGCAAACAATTAGAAGATGGTCGCTCTCTATCAGACTACAA 1106 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| || ||| | || || ||| ||||||| ||| Sbjct 1105 CATCCAGAAAGAATCTACACTACATCTGGTGCTTCGT 1069 Score = 104 bits (114), Expect = 2e-17 Identities = 165/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| |||||||| ||||| || || ||||| || |||||||| ||| | || || || | Sbjct 1516 AAATATGCAAATTTTCGTCAAGACCCTCACTGGTAAAACCATTACCCTTGAAGTTGAATC 1457 Query 38300 CACCGA--CAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC 38357 | | || || || ||||| |||| |||| || | ||||| || || ||||| | Sbjct 1456 CTCTGATTCAAT-TGAAAACG-TTAAGCAAAAGATTCAAGACAAGGAAGGTATTCCACCA 1399 Query 38358 GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 38417 || ||||| || | |||| ||| || || || || || || | ||| | | ||| Sbjct 1398 GATCAACAACGTTTGATTTTCGCAGGAAAGCAACTAGAAGATGGCCGCTCTTTATCAGAC 1339 Query 38418 TACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||| || ||| | || || ||| ||||||| ||| | ||||| || Sbjct 1338 TACAACATCCAGAAAGAATCTACACTACATCTGGTGCTTCGTCTTAGAGGTGG 1286 >seq2381 Length=15399 Score = 93.3 bits (102), Expect = 4e-14 Identities = 360/561 (64%), Gaps = 16/561 (3%) Strand=Plus/Plus Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943 |||||| | ||||||||||| || | || || || | | || |||||||| Sbjct 10896 TGAACAAGAGACAAGCAAAGTCAGTGTGAAGACCTTCATCACGACAGATAAGTTCGTTAG 10955 Query 132944 TGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGC 133003 ||||||||| || |||||||| || || || |||||||| || || | ||| || | Sbjct 10956 AGAAAGTCAAACCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCAAATGAAC 11015 Query 133004 CCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTT 133063 | || ||||||| || ||||| || || || || |||| ||||| | || | | | Sbjct 11016 CAGAGAAGAAGATACCTTCGACAGCAGCAAAGGCAACCAATCGCTCAGCAAAAGAG---T 11072 Query 133064 CTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTT 133123 | || | | |||||| | ||||| || ||||| |||| || || || |||| Sbjct 11073 CGTTACCAGAGATCCACTTGAATGCCCAATCTGCCTTACGCTTGATACAGGGAATGGTTT 11132 Query 133124 CGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAAC--GCACGTAGGTGTCGATGAG 133181 |||| || | ||||| || |||| || | | | ||||||||| || | Sbjct 11133 CGATAGCATCAAACAACATCTCCTTTTCTT--GATTATCTTTGATGTAGGTGTCAATCA- 11189 Query 133182 GGTCGAA---TACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCA 133238 | || || |||| | || | |||||| || || ||||| || || || || || Sbjct 11190 --ACAAACTGTAGGTTTCGGCATGGATGTTCTCAATAGCAATTTGGAAACCATAGAAACA 11247 Query 133239 CCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGAT 133298 || || | || ||||| | | ||| | |||| ||||| ||||| | Sbjct 11248 TTTGGCTTCAGGGATCTTTACTTCATCACAGAAGTTTTGAACCAAGTTTTCATTGACTAC 11307 Query 133299 GCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTT 133358 || || ||| || ||||||| || | |||||| || |||||| ||| Sbjct 11308 ACCATCAGCACTGGCAAAGAAGGCCAAGACACGAGAGATGAAGAATCGTTCGTTGCTGTT 11367 Query 133359 CA---AGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAA 133415 || | |||||| ||| | ||||||||||| ||| | || || | |||||||| Sbjct 11368 CATTTTGTTCTCCCAATCGTGTTGGTCCTTGGACAAGTCAATTTCTTCAGCAGTCCAAAA 11427 Query 133416 CGACGCCTCGGCTTTTTTGTA 133436 || || || || |||||||| Sbjct 11428 GGAAGCTTCAGCCTTTTTGTA 11448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500155206421760