Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq244 223 4e-53 seq1825 125 8e-24 seq2381 105 8e-18 seq2579 95.1 1e-14 >seq244 Length=4003 Score = 223 bits (246), Expect = 4e-53 Identities = 804/1245 (65%), Gaps = 26/1245 (2%) Strand=Plus/Plus Query 109990 TCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCA 110049 || |||| |||| | ||||| |||| || || ||||| || || |||||||| ||| | Sbjct 1695 TCAGCCAGCTCGCAAGAAGCTTCTAAAGCAGCGTGATAGATTGTTTCAAAAATTTGAATA 1754 Query 110050 TTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGA-ATAAACACATCCGC 110108 || | | || || | | ||||| | || || || | ||||| || || Sbjct 1755 TTGAGTTGCTTAGCTTCAGGAGAATCGAAAGCAA-ACTTCATTAACATAAATGTGTCTGC 1813 Query 110109 TAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTC 110168 ||||| |||||||| ||||| || ||||| || | |||| |||||| ||| ||| Sbjct 1814 GAGACCTTGAACACCTAGACCGATAGGGCGGTGACGCTTGTTTGAGCGTTCAGC---TTC 1870 Query 110169 TACG---GGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGT 110225 | | || ||| ||||| ||||||| | ||| | || | || | || Sbjct 1871 AATGACAGGATAATAGTTGATATCGATGATCTTATTCAAGTTTCTAGTGATTACTTTAAC 1930 Query 110226 GATTTCATGGAGTTTGTCGTAATCG-AACGTTTTCGTCTCCTTATTGACATATTTGGGGA 110284 || ||||| | || | | | ||| ||| || || || ||| | |||| | Sbjct 1931 GACATCATGCAACTTCTGGAAGTCGTAACTTTCACGG----TTGACAACAAAGGTGGGCA 1986 Query 110285 GAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTT 110344 |||||| || || | || || |||| | || || | | |||||| | ||||| Sbjct 1987 AAGCAATGGAAGCCAAGTTACAGACAGCAACTTCATCAGGGCTAGAGTATTCAACAATTT 2046 Query 110345 CCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGC 110404 | ||||||||||| || ||| || ||||||||| | ||| || || ||| | Sbjct 2047 CTGTACACAAGTTACTACACTTGATAGTACCCAAGTTTTGCTGGTTACTCTTTCTGTTAC 2106 Query 110405 ATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCT 110464 | |||||||||||||||||| |||| |||| ||||| || || | | || || || | Sbjct 2107 AGGCATCCTTATAGAGCATGAATGGATTACCGGTTTCAGTTTGAGCTTCAAGGATAGCAT 2166 Query 110465 TCCATACATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGT 110524 ||| | | || || ||| | |||| ||||||| || ||||| || Sbjct 2167 ACCACAATTTTTGTGCCTTGATTGTTTCTCTAGCTCTGCCTTCCTTTTCATACTTTTCGT 2226 Query 110525 ACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGA 110584 | || | ||||||| | || | || ||| |||| || || | | ||||||| Sbjct 2227 ATAATGCAACAAATTCATCACCCCATACTTCACAAAGTCCAGGAGCTTCATTAGGACAGA 2286 Query 110585 AGAGGGACCAATTTCCACCCTCCTCA---ACCCTCTTCATGAACAGGTCAGGAATCCACA 110641 | | |||||| | |||| | ||| || | || |||||| || ||||| | ||| | Sbjct 2287 ACAAGGACCATT---CACCATTGTCACGTACACGCTCCATGAAGAGATCAGGTACCCAAA 2343 Query 110642 TCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCA 110701 || |||| | |||||| | | || || | ||| ||| | | || | Sbjct 2344 GAGCATAGAACAAGTCACGAGCTCTAATTTCATCTTTACCAAAGTTCTTTCTCAAATCTA 2403 Query 110702 A-AAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACGA 110760 | ||||| | ||||| | |||||||||||| | || | ||| | || || ||| Sbjct 2404 AGAAAGTGAAA-ATATCAGGGTGCCATGGTTCCAAGTACATAGCAAAGGCACCGGGACGC 2462 Query 110761 CG---ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATA 110817 ||| |||| | |||||| || || || |||||||| | | ||| || | | Sbjct 2463 TTGTTACCACCCTGATCAACATAACGAGCAGTATTGTTGAAGACACGCAACATGGGCAAA 2522 Query 110818 ATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGG 110877 | |||| || | ||| || ||||| ||| || |||||||||||||| ||| Sbjct 2523 AGGCCATTAGAATAACCGTTAGTACCAGCAATATAAGAGCCATTGGCACGAATGTTGTGC 2582 Query 110878 ATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCA 110937 | | || ||| |||||||| || |||| |||||| ||||| | | | || | Sbjct 2583 ACGTTCAAACCGATACCACCAGCAGTCTTAGAAATTTGAGCACAAATTTTTAAGGTTTCG 2642 Query 110938 TAAATACCATCAATCGAATCTGCCTT-GTTGGCAATTAGAAAGCAAGAAGACATCTGAGG 110996 || ||||| || || ||||| |||| | | ||| || |||||||||||||| ||||| Sbjct 2643 TAGATACCTTCGATAGAATCATCCTTCATAGTCAACAAG-AAGCAAGAAGACATTTGAGG 2701 Query 110997 ACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGACAT 111056 |||||| || || |||||||| || ||||| | |||||| | || || || ||||| Sbjct 2702 ACGAGGAGTACCAGCATTGAAAAGAGTAGGACTGGCATGAGTAAAGTAACGTTCAGACAT 2761 Query 111057 CTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCG 111116 ||||||||| || | |||| | ||| || || |||||||||| ||||| || Sbjct 2762 AAGGTTGTATGTCTCAATGGCGGCATCGATATCGTTGCCATGAATACCAACAGCAACACG 2821 Query 111117 CATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATCAACACGCTGAAGGTAACTCTT 111176 ||||| || || ||| || |||| | ||| |||| | | | |||| Sbjct 2822 CATGATCAAATGTTGTGGTCTTTCAGCAACCTTACCATTGATCTTGAGCAAGTAAGAACG 2881 Query 111177 CTCTAGGGTCTTGAGACCAAAGTATCCAAAATCGAAATCACGATC 111221 ||| || ||||||| ||||||| | | | |||||||||||| Sbjct 2882 CTCGAGTGTCTTGAAACCAAAGAAATTGTATTTGAAATCACGATC 2926 >seq1825 Length=31147 Score = 125 bits (138), Expect = 8e-24 Identities = 287/427 (67%), Gaps = 14/427 (3%) Strand=Plus/Plus Query 109410 AAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAG 109469 ||| |||||||| || || || | ||| ||||||||| || | |||||| || | || Sbjct 7830 AAGGTAATACATGCCTGTCTTCAAACCCTTCTTCCATGCATAGAAATGCATAGAGGTCAG 7889 Query 109470 TTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAATCG 109529 || | | || | ||||||||||||| || || || ||||| || || Sbjct 7890 CTTACCATAATTAGGTTCGGCTGTAAACAAGTTCATAGATTGGGATTGATCAATAAAAGC 7949 Query 109530 ACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTGTA 109589 |||||||||||| ||||| || || || |||| |||||||||||||||||||| Sbjct 7950 ACCACGATCAGCAGCCATATCAATAATTGTTCTTTGAGAGATTTCCCAGACAGTCTTGTA 8009 Query 109590 CAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACC---AGCCTT 109646 | ||||||| |||||| || || ||| | ||| | | |||||| ||| | Sbjct 8010 GAGTTTCTTGAGATCATCAGGGATAGTAGGGATTTCTTGTACACTGCCACCATGAGCAAT 8069 Query 109647 CACCATGAGATCCTTCATCTCTTTCG-ACCAGAGACCGACCTTTTTGAGATCGTCAACAA 109705 || ||| || ||| | | | ||| ||||||||| ||| ||||||| | || Sbjct 8070 CATCAT---ATTCTTGAGGT-TGTCGCTCCAGAGACCACGCTTGACAAGATCGTTCAAAA 8125 Query 109706 GATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCG 109765 |||| | ||||||||| ||||||||| | || ||| ||||||||| | | Sbjct 8126 GATGTTGGTTGACCACTTGGAATTCACCACTCTGGACACGACGGGTATAGATGTTACTTG 8185 Query 109766 TGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAA---GCTGTGGGCA 109822 | || ||||| || || || |||| || | |||||| | ||| | ||||| |||| Sbjct 8186 TATAAGGTTCAAAGCATTCTGTGTTACCCAAGATTTG---ACTGGTACTGGCTGTAGGCA 8242 Query 109823 TGGGAGC 109829 | || || Sbjct 8243 TAGGCGC 8249 Score = 118 bits (130), Expect = 1e-21 Identities = 404/621 (65%), Gaps = 9/621 (1%) Strand=Plus/Plus Query 110616 CTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTC 110675 || ||| || || |||| || ||| | || |||| | ||||| ||| | || || Sbjct 9278 CTCCATAAAGAGATCAGAAACCCAAAGACCCAAGAACAAATCACGAGCACGTACTTCATC 9337 Query 110676 ATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAG 110735 | ||||||| || | ||| ||||||||||| | || ||| ||||| ||||| || Sbjct 9338 AGCACCTTGATTCTTTCTTAGTTCCAAAAAGTCAAAGACATCAATATGCCAAGGTTCAAG 9397 Query 110736 ATAGACAGCGATGGATCCCTTACG---ACGACCCGCCTGGTTAACATAGCGTGCTGTGGC 110792 || | || | | || ||||| || ||| | || | ||| | || |||||| | Sbjct 9398 GTACATGGCAAAGTTACCATTACGCTTACCACCACCTTGAGTTACAAAACGAGCTGTGTC 9457 Query 110793 ATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCT 110852 ||| ||||| | |||||||| | ||| |||| |||| |||||| ||||| ||| Sbjct 9458 ATTAAAGACACGAAGCATAGGCACAATACCATTGGATGTACCATTGGTACCAGCAATGTA 9517 Query 110853 GGACTTATTGGCACGAATGTCGTGGATATG-CATACCAATACCACCCGCCCACTTACTAA 110911 || | | |||| || | |||| ||| | ||| | |||||| || ||| | Sbjct 9518 AGAACCAGAGCCACGGATCTTTTGGA-ATGAGACACCGACACCACCAGCAGCTTTAGAGA 9576 Query 110912 TTTGTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAA 110971 | | ||||| ||| | || |||| ||||| || || |||| | || | | Sbjct 9577 TACGAGCACAGGTTGTTAAAGTGTCATAGATACCTTCGATACTATCTTCTTTCATCTGGA 9636 Query 110972 TTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCG 111031 || || || || | ||||| ||| || |||||||||||||| || ||||| | Sbjct 9637 CAAGGAAACAGCTGGATAATTGAGGCTTAGGTGTACCCGCATTGAAGAGGGTGGGTGTAG 9696 Query 111032 CATGAATGAACAGACCTTG-GGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCT 111090 ||||| |||| | | | | |||||| | |||||| | || || || |||| Sbjct 9697 CATGAGTGAA-ATATTTGGAGGACATGAGATCGTATGTCTTGAAGGCACTTTCTAGATCT 9755 Query 111091 TTACCGTGAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTT 111150 | ||| || ||||||| || || ||||| | ||| |||||||| ||| | | ||| Sbjct 9756 TGACCATGGATACCAAGAGCTACACGCATAATCATGTATTGAGGACGTTCAACAATCTTA 9815 Query 111151 CC-ATCAACACGCTGAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTATCCAAAATC 111209 || | | | | | |||||||| || | ||||||| ||||||| | | || || Sbjct 9816 CCGTTGATCTTGAAG-AGGTAACTACGTTCCAATGTCTTGAAACCAAAGAAACTGAAGTC 9874 Query 111210 GAAATCACGATCTGATTTGAT 111230 | |||| | ||| || |||| Sbjct 9875 GTAATCTCTATCAGAGATGAT 9895 >seq2381 Length=15399 Score = 105 bits (116), Expect = 8e-18 Identities = 165/230 (72%), Gaps = 12/230 (5%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAG--CAAAGTCCAGGCATGAGTC 119565 ||||| |||||||| ||| |||| || || ||| ||| |||| ||||||||||| | Sbjct 10922 TGAAGACCTTCATCACGACAGATAAGTTCGTTAGAGAAAGTCAAA--CCAGGCATGAGAC 10979 Query 119566 CTCTTTTCTTTAGCCAAAAGAT---GGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCA 119622 | | ||||| ||||| ||||| |||| | || ||||| |||||||| || || | Sbjct 10980 CACGCTTCTTGAGCCAGAAGATAGAGGCAAATGAA---CCAGAGAAGAAGATACCTTCGA 11036 Query 119623 CACAGGCGAAAGCGAATAGACGCTCAGCAAAAG-GTCGAGACTTGTCGAACCACTTGAGA 119681 || || || || | | ||||||||||||| |||| || | || |||||||| Sbjct 11037 CAGCAGCAAAGGCAACCAATCGCTCAGCAAAAGAGTCGTTACCAG-AGATCCACTTGAAT 11095 Query 119682 GCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAA 119731 ||||| | |||||||||| || ||||| | |||| ||| || || || Sbjct 11096 GCCCAATCTGCCTTACGCTTGATACAGGGAATGGTTTCGATAGCATCAAA 11145 >seq2579 Length=11567 Score = 95.1 bits (104), Expect = 1e-14 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 136696 TAGTCAAACGCACCGTTCTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAG 136755 || |||| | | ||| || | ||||||||||||||||||||||||||| ||||||||||| Sbjct 11421 TACTCAACCACCCCGCTCGTTTAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAG 11362 Query 136756 GTCACGGGTTCGAGCCCCGT 136775 ||||| ||||||| ||| || Sbjct 11361 GTCACAGGTTCGACCCCTGT 11342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588955282769200