Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq2360 109 6e-19 >seq2360 Length=56676 Score = 109 bits (120), Expect = 6e-19 Identities = 418/645 (65%), Gaps = 26/645 (4%) Strand=Plus/Plus Query 154455 GGCAGTTGCACAATGAAATTAAATGCAGCAGCAGAACTAATGCCTGTGTCATGGGAAGAG 154514 || ||||| || ||||| || ||||| || | ||| | || ||||| ||||| ||| Sbjct 13992 GGTAGTTGTACTATGAAGTTGAATGCTACAACTGAAATGATTCCTGTCACATGGCCCGAG 14051 Query 154515 TTTGCTAACGTGCATCCACATACACCTATGATACAGACCATGGGTTATCAGAAAATTATA 154574 || || ||| | || || | | ||| | ||| || ||||||| | || | Sbjct 14052 TTCGCCAACATTCACCCTTTTGCTCCTGTTGAACAAACAGAAGGTTATCTTACCATGTTG 14111 Query 154575 GATGA-CTTACAGAAATGGTTATGT--GATATCACAGGGTTTGATTCTATATCATTACAA 154631 ||||| ||| | || || || || || || || || ||||| | | || | || Sbjct 14112 GATGAACTTGCCGA--TGATT-TGAAAGAGATTACTGGTTTTGAAGGTGTCTCTCTTCAG 14168 Query 154632 CCTAACGCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCAATCCAAGCATACCATCAA 154691 || ||| | || | || ||||| ||||| || || | || | || ||||| || Sbjct 14169 CCAAACTCTGGTGCTCAAGGTGAATATGCCGGTCTTCGTGTTATTCGTGCTTACCACCAT 14228 Query 154692 GGATCAGGAGATGATAAAAGAAATGTATGTTTGATACCAGAGTCAGCACATGGAACTAAT 154751 | || || | || | ||||| ||| |||| || || ||||| || || || Sbjct 14229 GCTCGTGGTGAAACTGAACGTAATGTCTGTCTGATTCCTATCTCTGCACACGGTACCAAC 14288 Query 154752 CCTGCTAGTGCTGTCATGGCAGGGATGAAAGTTGTAGGTGTCAAGTGTGATGATGATGGT 154811 ||||| ||||| ||| | |||||| | || || || |||||||| | ||| Sbjct 14289 CCTGCCTCTGCTGCTATGTCCGGGATGGATGTGGTTATCGTTCAGTGTGATTCCAACGGT 14348 Query 154812 AACATAGACATCAAAGATCTAGAG---AAG-----AAAGCAATCATGAATACATTTGAAC 154863 || | || || ||||| | || ||| |||||| || | ||| ||| | | Sbjct 14349 AATTTGGATATGGAAGATTTGAAGGCAAAGGCTGAAAAGCA--CAAGGATAAATTAG--C 14404 Query 154864 TGTCATGTATTATGATTACATACCCATCTACACATGGTGTATTTGAAACTAACATTA--G 154921 || || ||||| || || || ||||| |||| | |||||| | || | Sbjct 14405 TGCTGTG----ATGATCACCTATCCTTCTACCTTTGGTATCTTTGAAGCAGGTGTTTCTG 14460 Query 154922 ACAGATATGTAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCT 154981 | || | ||||||||| ||||||| ||||||||| ||| || |||||||| || || | Sbjct 14461 A-AGCT-TGTAAGATCATTCATGATAATGGTGGTTTGGTCTACCTTGATGGTGCTAACTT 14518 Query 154982 AAATGCACAGGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAA 155041 ||||| || | ||| || | || || || |||||| ||||| || || | || Sbjct 14519 GAATGCTCAAATTGGATTAACTAAGCCTGCCGAAATTGGTGCTGATGTTTGCCACATGAA 14578 Query 155042 CTTACATAAAACATTCTGTATTCCACATGGAGGTGGAGGTCCTGG 155086 || || || || ||||||||||| || || ||||| |||||||| Sbjct 14579 TTTGCACAAGACTTTCTGTATTCCTCACGGCGGTGGTGGTCCTGG 14623 Score = 96.9 bits (106), Expect = 4e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 153288 TACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAA 153347 || ||||| || ||| |||| || ||||| || | || ||| || | || ||||||||| Sbjct 12705 TATACTCCTTACCAACCTGAAATTTCTCAAGGTCGTTTAGAATCTCTGTTGAATTACCAA 12764 Query 153348 ACGCTCATCACAGAACTTACAGGATTACCAATAGCAAACGCATCTCTATTAGATGAAGCA 153407 || || |||| || | || ||||| || || || || |||||||| || ||||||| Sbjct 12765 ACACTAGTCACCGATTTAACTGGATTGCCTATTGCCAATGCATCTCTTTTGGATGAAGGT 12824 Query 153408 ACTGCAGCAGCAGAAGCAATG 153428 || ||||| |||||||| ||| Sbjct 12825 ACAGCAGCTGCAGAAGCCATG 12845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579192426189760