Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq2360 127 2e-24 >seq2360 Length=56676 Score = 127 bits (140), Expect = 2e-24 Identities = 488/755 (65%), Gaps = 26/755 (3%) Strand=Plus/Plus Query 159034 GTATTTAAAAAATATCATAGTGAGACTGACATGATGAGATATATCTATGAGTTAGCATCA 159093 ||||| || | |||||| ||| ||||| ||| | | |||||| || | | | | Sbjct 13896 GTATTCAACACCTATCATTCTGAAACTGAAATGCTTCGTTATATCCATCACCTTGAAAGC 13955 Query 159094 AAAGATTTCTCATTAGTAAATGGTATGGTTCCACTTGGTAGTTGTACTATGAAACTAAAC 159153 || ||| | || | ||| | ||| | | | ||||||||||||||||| | || Sbjct 13956 AAGGATCTTTCTCTTGTACACTCCATGATCGCTTTGGGTAGTTGTACTATGAAGTTGAAT 14015 Query 159154 GCAGCATCAGAACTGATGCCTGTGTCATGGGAAGAGTTTGCTAACGTGCATCCACATACA 159213 || || | ||| |||| ||||| ||||| ||||| || ||| | || || | | Sbjct 14016 GCTACAACTGAAATGATTCCTGTCACATGGCCCGAGTTCGCCAACATTCACCCTTTTGCT 14075 Query 159214 CCTATGATACAGACCATGGGTTATCAAAAAATTATAGATGA-CTTACAGAAATGGTTATG 159272 ||| | ||| || ||||||| | || | ||||| ||| | || || || || Sbjct 14076 CCTGTTGAACAAACAGAAGGTTATCTTACCATGTTGGATGAACTTGCCGA--TGATT-TG 14132 Query 159273 T--GATATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAG 159330 || || || || ||||| | | || | || || ||| | || | || ||||| Sbjct 14133 AAAGAGATTACTGGTTTTGAAGGTGTCTCTCTTCAGCCAAACTCTGGTGCTCAAGGTGAA 14192 Query 159331 TATGCAGGACTGTTAGCAATCCAAGCATACCATCAAGGATCAGGAGATGATAAAAGAAAT 159390 ||||| || || | || | || ||||| || | || || | || | ||| Sbjct 14193 TATGCCGGTCTTCGTGTTATTCGTGCTTACCACCATGCTCGTGGTGAAACTGAACGTAAT 14252 Query 159391 GTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAGGG 159450 || ||| |||| || || ||||| || || || ||||| || || | ||| | ||| Sbjct 14253 GTCTGTCTGATTCCTATCTCTGCACACGGTACCAACCCTGCCTCTGCTGCTATGTCCGGG 14312 Query 159451 ATGAAAGTTGTAGGTGTCAAGTGTGATGATGATGGCAACATAGACATCAAAGATCTAGAG 159510 ||| | || || || |||||||| | || || | || || ||||| | || Sbjct 14313 ATGGATGTGGTTATCGTTCAGTGTGATTCCAACGGTAATTTGGATATGGAAGATTTGAAG 14372 Query 159511 ---AAG-----AAAGCAATCATGAATACATTTGAACTGTCATGTATTATGATTACATATC 159562 ||| |||||| || | ||| ||| | ||| || ||||| || |||| Sbjct 14373 GCAAAGGCTGAAAAGCA--CAAGGATAAATTAG--CTGCTGTG----ATGATCACCTATC 14424 Query 159563 CATCTACACATGGTGTATTTGAAACAAACAT--CAGACAGATATGTAAGATTGTTCATGA 159620 | ||||| |||| | |||||| || | | || || | |||||||| ||||||| Sbjct 14425 CTTCTACCTTTGGTATCTTTGAAGCAGGTGTTTCTGA-AGCT-TGTAAGATCATTCATGA 14482 Query 159621 GAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAA 159680 ||||||||| ||| || ||||||||||| || | ||||| || | || || | || Sbjct 14483 TAATGGTGGTTTGGTCTACCTTGATGGTGCTAACTTGAATGCTCAAATTGGATTAACTAA 14542 Query 159681 ACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCC 159740 || || |||||| ||||| || || | || || || ||||| ||||||||||| Sbjct 14543 GCCTGCCGAAATTGGTGCTGATGTTTGCCACATGAATTTGCACAAGACTTTCTGTATTCC 14602 Query 159741 ACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTG 159775 || || ||||| |||||||| | || || |||| Sbjct 14603 TCACGGCGGTGGTGGTCCTGGTATGGGCCCCATTG 14637 Score = 93.3 bits (102), Expect = 5e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 157963 TACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAA 158022 || ||||| || ||| |||| || ||||| || | || ||| || | || ||||||||| Sbjct 12705 TATACTCCTTACCAACCTGAAATTTCTCAAGGTCGTTTAGAATCTCTGTTGAATTACCAA 12764 Query 158023 ACGCTCATCACAGAACTCACAGGACTACCGATAGCAAACGCATCTCTATTAGATGAAGCA 158082 || || |||| || | || ||| | || || || || |||||||| || ||||||| Sbjct 12765 ACACTAGTCACCGATTTAACTGGATTGCCTATTGCCAATGCATCTCTTTTGGATGAAGGT 12824 Query 158083 ACTGCAGCAGCAGAAGCAATGCTG 158106 || ||||| |||||||| ||| || Sbjct 12825 ACAGCAGCTGCAGAAGCCATGTTG 12848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588030515299040