Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq2232 168 1e-36 seq1425 152 1e-31 seq2078 143 6e-29 >seq2232 Length=20840 Score = 168 bits (186), Expect = 1e-36 Identities = 162/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | |||||| || || |||||||| |||||||| || | ||||| | |||||||| Sbjct 304 AACCAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCAGAAAGAGAACGGCCATCTTC 363 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | || ||||| || |||||||| |||||||||||||| || || ||||| |||||||| Sbjct 364 TAATTGTTTACCAGCAAAGATAAGACGTTGTTGGTCTGGGGGRATACCTTCCTTGTCTTG 423 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || |||||||||||||||||||||| ||| || ||| ||||| | || | ||||| Sbjct 424 GATCTTTTGCTTGACGTTCTCAATGGAGTCGGAGGATTCGACTTCCAAAGTMATAGTCTT 483 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||| || || || | ||||| Sbjct 484 GCCAGTAAGAGTCTTAACRAAAATCTGCAT 513 Score = 167 bits (184), Expect = 5e-36 Identities = 163/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | |||||| || || |||||||| |||||||| || | ||||| | |||||||| Sbjct 760 AACCAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCAGAAAGAGAACGGCCATCTTC 819 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | || ||||| || |||||||| |||||||||||||| || || ||||| |||||||| Sbjct 820 TAATTGTTTACCAGCAAAGATAAGACGTTGTTGGTCTGGGGGGATACCTTCCTTGTCTTG 879 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || |||||||||||||||||||||| ||| || ||| ||||| | || | ||||| Sbjct 880 GATCTTTTGCTTGACGTTCTCAATGGAGTCGGAGGATTCGACTTCCAAAGTGATGGTCTT 939 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | |||||| Sbjct 940 ACCAGTGAGGGTCTTAACGAAAATTTGCAT 969 Score = 140 bits (154), Expect = 7e-28 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||||||||||||| || || || ||||| || | |||| | || ||||| | ||| Sbjct 538 GTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGAACGGCCGTCTTCCAACTG 597 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| ||||| || || ||||||||||||||||| |||||||| |||||||| || || Sbjct 598 CTTACCAGCGAAAATGAGACGTTGTTGGTCTGGAGGRATGCCTTCCTTGTCTTGGATCTT 657 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| || || || || | || || ||| || || | ||| | || || || || Sbjct 658 TTGCTTTACATTTTCGATAGAATCAGATGATTCAACCTCTAAGGTGATGGTTTTGCCAGT 717 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | ||| || || || | |||||| Sbjct 718 AAGAGTCTTGACAAAGATTTGCAT 741 >seq1425 Length=32788 Score = 152 bits (168), Expect = 1e-31 Identities = 127/156 (81%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | |||||| || || || ||||| || ||||| || | ||||| | |||||||| Sbjct 31200 AACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCRGAAAGAGAACGACCATCTTC 31259 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | |||||||| || |||||||| |||||||||||||| ||||| ||||| |||||||| Sbjct 31260 CAATTGCTTACCAGCAAAGATAAGACGTTGTTGGTCTGGGGGAATACCTTCCTTGTCTTG 31319 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT 195086 ||| ||||||||||| || ||||||||||| || || Sbjct 31320 AATCTTTTGCTTGACATTGTCAATGGTGTCAGAGCT 31355 >seq2078 Length=27221 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || || || ||||| || || ||||| || | | || | |||||||| Sbjct 1304 ACCAGATGTAGTGTAGATTCTTTCTGGATGTTGTAGTCTGATAAAGAGCGGCCATCTTCT 1363 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || ||||| |||||||| || | |||||||| ||||| ||||| ||||| ||||||||| Sbjct 1364 AGTTGCTTTCCTGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCCTTGTCTTGA 1423 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || |||||||| ||||| ||||| | || || ||| ||||||||||||| || || Sbjct 1424 ATCTTTTGCTTAACGTTTTCAATTGAATCAGAGGATTCAACTTCAAGGGTAATGGTTTTA 1483 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | |||||| Sbjct 1484 CCAGTGAGGGTCTTGACGAAAATTTGCAT 1512 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || || || ||||| || || ||||| || | |||| | |||||||| Sbjct 1076 ACCAGATGTAGTGTAGATTCTTTCTGGATGTTGTAGTCTGATAGAGAGCGACCATCTTCT 1135 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | || || || || || ||||| || ||||||||||| ||||| |||||||| |||||| Sbjct 1136 AATTGTTTGCCGGCAAAAATAAGACGCTGTTGGTCTGGTGGAATACCTTCTTTATCTTGA 1195 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || |||||||||||||| ||||| | || || ||| ||||| || || | || || Sbjct 1196 ATCTTTTGCTTGACGTTTTCAATAGAATCAGAGGATTCGACTTCTAGTGTGATTGTTTTG 1255 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | || || || || | |||||| Sbjct 1256 CCTGTGAGTGTCTTCACAAAGATTTGCAT 1284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109441598334338