Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq2078 105 4e-18 seq2232 95.1 8e-15 >seq2078 Length=27221 Score = 105 bits (116), Expect = 4e-18 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||| ||||| ||||| || || || |||| || | ||||| |||||||| Sbjct 1093 TTCTTTCTGGATGTTGTAGTCTGATAGAGAGCGACCATCTTCTAATTGTTTGCCGGCAAA 1152 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || || |||||| | || | || || || || |||||| || |||||| Sbjct 1153 AATAAGACGCTGTTGGTCTGGTGGAATACCTTCTTTATCTTGAATCTTTTGCTTGACGTT 1212 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | || || ||| || || || || | || || ||||| || ||||| |||||||| Sbjct 1213 TTCAATAGAATCAGAGGATTCGACTTCTAGTGTGATTGTTTTGCCTGTGAGTGTCTTCAC 1272 Query 34970 AAAGATCTGCATA 34982 |||||| |||||| Sbjct 1273 AAAGATTTGCATA 1285 >seq2232 Length=20840 Score = 95.1 bits (104), Expect = 8e-15 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| || |||||| || || || ||||| ||||| || |||| || Sbjct 304 AACCAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCAGAAAGAGAACGGCCATCTTC 363 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 | ||||| || ||||| || || ||||| |||||| | || | || |||||||| Sbjct 364 TAATTGTTTACCAGCAAAGATAAGACGTTGTTGGTCTGGGGGRATACCTTCCTTGTCTTG 423 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||| || |||||| | || || || || || || || | || || || || Sbjct 424 GATCTTTTGCTTGACGTTCTCAATGGAGTCGGAGGATTCGACTTCCAAAGTMATAGTCTT 483 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || |||||||| || || ||||||||| Sbjct 484 GCCAGTAAGAGTCTTAACRAAAATCTGCATA 514 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| || |||||| || || || ||||| ||||| || |||| || Sbjct 760 AACCAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCAGAAAGAGAACGGCCATCTTC 819 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 | ||||| || ||||| || || ||||| |||||| | || | || |||||||| Sbjct 820 TAATTGTTTACCAGCAAAGATAAGACGTTGTTGGTCTGGGGGGATACCTTCCTTGTCTTG 879 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||| || |||||| | || || || || || || || | || ||||| || Sbjct 880 GATCTTTTGCTTGACGTTCTCAATGGAGTCGGAGGATTCGACTTCCAAAGTGATGGTCTT 939 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || ||||| ||||| || || || ||||| || Sbjct 940 ACCAGTGAGGGTCTTAACGAAAATTTGCATGTT 972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324622466487792