Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq2381 156 5e-33 >seq2381 Length=15399 Score = 156 bits (172), Expect = 5e-33 Identities = 301/442 (68%), Gaps = 4/442 (1%) Strand=Plus/Plus Query 37167 AACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAA 37226 ||||| | ||| ||||| ||| || | ||||||||| | || || | ||| ||||| Sbjct 10898 AACAAGAGACAAGCAAAGTCAGTGTGAAGACCTTCATCACGACAGATAAGTTCGTTAGAG 10957 Query 37227 AAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCA 37286 || || || || ||||| | ||| | || || | ||| || || | ||||| || ||| Sbjct 10958 AAAGTCAAACCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCAAATGAACCA 11017 Query 37287 GAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTA 37346 || ||||| |||||||| || || ||||| || || | || | | |||| | Sbjct 11018 GAGAAGAAGATACCTTCGACAGCAGCAAAGGCAACCAATCGCTCAGCAAAAG---AGTCG 11074 Query 37347 TAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCA 37406 | | |||| ||||| || || |||||||||||| || | ||| ||| ||||| Sbjct 11075 TTACCAGAGATCCACTTGAATGCCCAATCTGCCTTACGCTTGATACAGGGAATGGTTTCG 11134 Query 37407 ATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAA 37466 || || | || | | | ||||||| | ||||| | || || || ||||| | ||| Sbjct 11135 ATAGCATCAAACAACATCTCCTTTTCTTGATTATCTTTGATGTAGGTGTCAATCAACAAA 11194 Query 37467 CTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCT 37526 || || |||| | || || || |||||||| || || |||||||| ||||| | ||| Sbjct 11195 CTGTAGGTTTCGGCATGGATGTTCTCAATAGCAATTTGGAAACCATAGAAACATTTGGCT 11254 Query 37527 TCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCA 37586 |||| | | || || | | | || | | | | ||||||||||| |||| |||||| Sbjct 11255 TCAGGGATCTTTACTTCATCACAGAAGTTTTGAACCAAGTTTTCATTGACTACACCATCA 11314 Query 37587 CTAGCTGCAAAGAAAG-CAAGA 37607 | |||||||| | ||||| Sbjct 11315 GCACTGGCAAAGAAGGCCAAGA 11336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592295965256560