Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq2078 140 3e-28 seq2232 136 3e-27 seq1425 122 7e-23 >seq2078 Length=27221 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | || | ||| || ||||||||||| || || ||||| || | Sbjct 1058 CCTCCACGGAGACGAAGCACCAGATGTAGTGTAGATTCTTTCTGGATGTTGTAGTCTGAT 1117 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| || ||||| || || ||||| || | ||||||||| || || ||| Sbjct 1118 AGAGAGCGACCATCTTCTAATTGTTTGCCGGCAAAAATAAGACGCTGTTGGTCTGGTGGA 1177 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||||||||||||||| ||||| || || |||| | || ||||| | ||| ||| Sbjct 1178 ATACCTTCTTTATCTTGAATCTTTTGCTTGACGTTTTCAATAGAATCAGAGGATTCGACT 1237 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || |||| |||||||| || | || || ||||| || ||||| Sbjct 1238 TCTAGTGTGATTGTTTTGCCTGTGAGTGTCTTCACAAAGATTTGCAT 1284 Score = 138 bits (152), Expect = 9e-28 Identities = 180/249 (72%), Gaps = 4/249 (2%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| | ||| | || | ||| || ||||||||||| || || ||||| || | Sbjct 1286 CCACCTCTAAGACGAAGCACCAGATGTAGTGTAGATTCTTTCTGGATGTTGTAGTCTGAT 1345 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| || | |||||| ||||| || |||||||| |||||||| || ||| Sbjct 1346 AAAGAGCGGCCATCTTCTAGTTGCTTTCCTGCGAAAATCAAACGTTGTTGATCTGGTGGA 1405 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || |||||||| ||||| || || |||| | | ||||| | ||| ||| Sbjct 1406 ATACCTTCCTTGTCTTGAATCTTTTGCTTAACGTTTTCAATTGAATCAGAGGATTCAACT 1465 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAAGA 101482 ||||| || | ||||| || || | || || || || || ||||| ||| || | Sbjct 1466 TCAAGGGTAATGGTTTTACCAGTGAGGGTCTTGACGAAAATTTGCATATTTA----AAAA 1521 Query 101483 TTTGTAAAA 101491 | ||||||| Sbjct 1522 TGTGTAAAA 1530 >seq2232 Length=20840 Score = 136 bits (150), Expect = 3e-27 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| || |||||||||||||||||||| |||||||| || | | || | | | Sbjct 298 ACGAAGAACCAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCAGAAAGAGAACGGCC 357 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| || ||||| ||||| ||||| || | ||| ||||| || || || || ||||| || Sbjct 358 ATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGTTGGTCTGGGGGRATACCTTCCTT 417 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||| || ||||| || || | || | | ||| || | ||| ||||| | ||| | Sbjct 418 GTCTTGGATCTTTTGCTTGACGTTCTCAATGGAGTCGGAGGATTCGACTTCCAAAGTMAT 477 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||| || | ||| || || || |||||||| Sbjct 478 AGTCTTGCCAGTAAGAGTCTTAACRAAAATCTGCAT 513 Score = 125 bits (138), Expect = 6e-24 Identities = 158/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| || |||||||||||||||||||| |||||||| || | | || | | | Sbjct 754 ACGAAGAACCAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCAGAAAGAGAACGGCC 813 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| || ||||| ||||| ||||| || | ||| ||||| || || || || ||||| || Sbjct 814 ATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGTTGGTCTGGGGGGATACCTTCCTT 873 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||| || ||||| || || | || | | ||| || | ||| ||||| | ||||| Sbjct 874 GTCTTGGATCTTTTGCTTGACGTTCTCAATGGAGTCGGAGGATTCGACTTCCAAAGTGAT 933 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || || || | || || || || || |||||| Sbjct 934 GGTCTTACCAGTGAGGGTCTTAACGAAAATTTGCATG 970 >seq1425 Length=32788 Score = 122 bits (134), Expect = 7e-23 Identities = 122/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| || |||||||||||||| ||||| || ||||| || | | || | | Sbjct 31194 ACGGAGAACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCRGAAAGAGAACGACC 31253 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| |||||||||||||| ||||| || | ||| ||||| || || ||||| ||||| || Sbjct 31254 ATCTTCCAATTGCTTACCAGCAAAGATAAGACGTTGTTGGTCTGGGGGAATACCTTCCTT 31313 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGA 101412 |||||||| ||||| || ||| | || | |||||||| Sbjct 31314 GTCTTGAATCTTTTGCTTGACATTGTCAATGGTGTCAGA 31352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396264809384598