Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq2232 109 4e-19 >seq2232 Length=20840 Score = 109 bits (120), Expect = 4e-19 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || ||| ||| || || || ||||| ||||| ||| || |||| ||| Sbjct 533 ACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGAACGGCCGTCTTCC 592 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 ||||||||||| || || || || || ||||| || | || | ||| |||||||| Sbjct 593 AACTGCTTACCAGCGAAAATGAGACGTTGTTGGTCTGGAGGRATGCCTTCCTTGTCTTGG 652 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 |||||||| |||||| | | ||| || || | || ||||| | || || ||||| Sbjct 653 ATCTTTTGCTTTACATTTTCGATAGAATCAGATGATTCAACCTCTAAGGTGATGGTTTTG 712 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | ||| || ||||| || ||||| Sbjct 713 CCAGTAAGAGTCTTGACAAAGATTTGCAT 741 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || |||||||| |||||||| ||||| ||| || | || || Sbjct 305 ACCAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCAGAAAGAGAACGGCCATCTTCT 364 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || || ||||| ||||| || || || ||||| || | ||| | || |||||||| Sbjct 365 AATTGTTTACCAGCAAAGATAAGACGTTGTTGGTCTGGGGGRATACCTTCCTTGTCTTGG 424 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 |||||||| || || | | || || || | || || |||| || || || || Sbjct 425 ATCTTTTGCTTGACGTTCTCAATGGAGTCGGAGGATTCGACTTCCAAAGTMATAGTCTTG 484 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | ||| || || ||||||||||| Sbjct 485 CCAGTAAGAGTCTTAACRAAAATCTGCAT 513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380924535506922