Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq980 111 4e-19 >seq980 Length=35733 Score = 111 bits (122), Expect = 4e-19 Identities = 223/323 (69%), Gaps = 16/323 (5%) Strand=Plus/Minus Query 150495 AAATTCTT-TCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATCGTGGTGAATTC 150553 ||||| || ||| || |||||||||| || | ||| ||| |||| || ||||||||||| Sbjct 20230 AAATTGTTCTCTCTGGATATGGGTGCCTTGATTGCCGGTGCTAAATACCGTGGTGAATTT 20171 Query 150554 GAAGAACGTGTAGACAATTTGCTACAAGAACTAAAAGAACGC---GATGATGTTATTCTG 150610 ||||| ||| | | | | | ||||| | || ||| | || | ||| || || Sbjct 20170 GAAGAGCGTCTGAAGGCTGTCTTGAAAGAAGTCAAGGAATCCAAGGAAGGTGTCATCTTG 20111 Query 150611 TTCATCGATGAAATCCATACTATTATGGGTGCTGGTGCGACTGGCGGCGGTTCTTTGGAT 150670 ||||| ||||| ||||| ||| | ||||||||||| | || | |||||| ||||| Sbjct 20110 TTCATTGATGAGATCCACACTGTCTTGGGTGCTGGTAAGGCT---GAAGGTTCTATGGAT 20054 Query 150671 ATGAGCAATATGTTAAAACCTGCTCTATCTCGCGGTGAAATTCG-TGTCATCGGTGCAAC 150729 ||| |||| || ||| || |||| ||||| |||| ||| | ||||| || Sbjct 20053 GCTGCCAACTTGTTGAAGCCTATGCTGGCTCGTGGTGAGCTTCGCTGT-GTGGGTGCTAC 19995 Query 150730 AACC--TACGATGAATATCGTAAACACATTGAAAAAGATGCAGCACTACAGCGTCGTTTC 150787 ||| ||| |||||| ||| || || ||||| || | || | | ||||||||| Sbjct 19994 TACCATTAC--TGAATACCGTGAA---ATCGAAAAGGACCCTGCCTTTGAACGTCGTTTC 19940 Query 150788 ATGAAGGTTGATATTGTTGAACC 150810 |||||| ||| ||| ||||| Sbjct 19939 CAGAAGGTAGATGTTGGAGAACC 19917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147549024345372