Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2381 93.3 8e-14 >seq2381 Length=15399 Score = 93.3 bits (102), Expect = 8e-14 Identities = 165/238 (69%), Gaps = 7/238 (3%) Strand=Plus/Plus Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190 || |||||||| |||| | ||||| || || | ||| || |||| ||||| | | Sbjct 10907 CAAGCAAAGTCAGTGTGAAGACCTTCATCACGACAGATAAGTTCGTTAGAGAAAGTCAAA 10966 Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 |||||||||| || | || ||||||||||| || | || || || |||||||||||| Sbjct 10967 CCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCAAATGAACCAGAGAAGAAG 11026 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCC--TCTCTCCGAAAGAAGCGTTCTTGTCTG 48308 || || || || || || || || | || || ||| | || ||| || || | | Sbjct 11027 ATACCTTCGACAGCAGCAAAGGC----AACCAATCGCTCAGCAA-AAGAGTCGTTACCAG 11081 Query 48309 AGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366 ||||||| | ||||| |||||||| |||||| || || || || || || || Sbjct 11082 AGATCCACTTGAATGCCCAATCTGCCTTACGCTTGATACAGGGAATGGTTTCGATAGC 11139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931500033333760