Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2381 109 1e-18 >seq2381 Length=15399 Score = 109 bits (120), Expect = 1e-18 Identities = 175/248 (71%), Gaps = 5/248 (2%) Strand=Plus/Minus Query 25787 TGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGT 25846 |||||| ||| ||||| ||| ||| | |||||| | ||||| ||||| | |||| Sbjct 11147 TGTTTGATGCTATCGAAACCATTCCCTGTATCAAGCGTAAGGCAGATTGGGCATTCAAGT 11088 Query 25847 GGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGG 25906 ||||| | | | || |||| ||||| |||| |||||||||||||| || | Sbjct 11087 GGATCTCTGGTAACGACTCT---TTTGCTGAGCGATTGGTTGCCTTTGCTGCTGTCGAAG 11031 Query 25907 GCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGC 25966 | ||||| ||| ||||| ||||| | ||||||||||||||| || || ||||| Sbjct 11030 GTATCTTCTTCTCTGGTTCATTTGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCTCATGC 10971 Query 25967 CCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTT 26025 | || || ||||| || ||||| || ||| | | || || ||||| |||| || ||| Sbjct 10970 CTGGTTTG-ACTTTCTCTAACGAACTTATCTGTCGTGATGAAGGTCTTCACACTGACTTT 10912 Query 26026 GCCTGCCT 26033 || || || Sbjct 10911 GCTTGTCT 10904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928812127884160