Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq2232 82.4 6e-11 >seq2232 Length=20840 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 28548 GTAAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAA 28607 || || |||||||| || || || || | || ||||| ||||| || ||| ||| Sbjct 975 GTTAACATGCAAATTTTCGTTAAGACCCTCACTGGTAAGACCATCACTTTGGAAGTCGAA 916 Query 28608 CCTTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTA 28667 | || || | | | | |||||||||| ||| ||||| || || | ||| | Sbjct 915 TCCTCCGACTCCATTGAGAACGTCAAGCAAAAGATCCAAGACAAGGAAGGTATCCCCCCA 856 Query 28668 GATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 28727 || ||||| | ||||||||||| || |||||||| |||||| || | | || Sbjct 855 GACCAACAACGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGCCGTTCTCTTTCTGAC 796 Query 28728 TATAACATTCAAAAAGAATCTACTCTGCACATGGT 28762 || || || |||||||||||||| || ||| |||| Sbjct 795 TACAATATCCAAAAAGAATCTACCCTTCACTTGGT 761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425390210476506