Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq244 127 1e-24 >seq244 Length=4003 Score = 127 bits (140), Expect = 1e-24 Identities = 343/522 (66%), Gaps = 2/522 (0%) Strand=Plus/Plus Query 25888 ATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGG 25947 ||| |||||||| || ||| ||| |||| | || |||||| || | ||| || Sbjct 2276 ATTAGGACAGAACAAGGACCATTCACCATTGTCACGTACACGCTCCATGAAGAGATCAGG 2335 Query 25948 AATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTT 26007 | ||| | ||||| || || || | ||||| ||||| ||||| || |||||| | Sbjct 2336 TACCCAAAGAGCATAGAACAAGTCACGAGCTCTAATTTCATCTTTACCAAAGTTCTTTCT 2395 Query 26008 TAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACC 26067 | |||||||||| |||||||| | |||||||||||| || || |||||||| ||| Sbjct 2396 CAAATCTAAGAAAGTGAAAATATCAGGGTGCCATGGTTCCAAGTACATAGCAAAGGCACC 2455 Query 26068 TTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACAT 26127 | || ||||| ||||| || || | ||||| | ||||| || |||||| Sbjct 2456 GGGACGCTTGTTACCACCCTGATCAACATAACGAGCAGTATTGTTGAAGACACGCAACAT 2515 Query 26128 TGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAAT 26187 || | | ||| | ||| | ||||| || | | ||| | || || | | | ||| Sbjct 2516 GGGCAAAAGGCCATTAGAATAACCGTTAGTACCAGCAATATAAGAGCCATTGGCACGAAT 2575 Query 26188 ATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAAAC 26247 | ||| | | | |||||| |||||||| || ||||| |||||| | | Sbjct 2576 GTTGTGCACGTTCAAACCGATACCACCAGCAGTCTTAGAAATTTGAGCACAAATTTTTAA 2635 Query 26248 TGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATAA 26307 || ||| | || |||| || |||| | ||||| || || || |||||||| | Sbjct 2636 GGTTTCGTAGATACCTTCGATAGAATCATCCTTCATAGTCAACAAGAAGCAAGAAGACAT 2695 Query 26308 TTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATATCCTTC 26367 ||| | | ||| || || | ||| || | || || | ||||||||| | || | ||| Sbjct 2696 TTGAGGACGAGGAGTACCAGCATTGAAAAGAGTAGGACTGGCATGAGTAAAGTAACGTTC 2755 Query 26368 ACTCA-AAGCTGTATAAGTTTCAAGAACTTCATCGATATTGT 26408 | || ||| | | || || |||| | ||||||||| || Sbjct 2756 AGACATAAGGT-TGTATGTCTCAATGGCGGCATCGATATCGT 2796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253031321835050