Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq2360 116 4e-21 >seq2360 Length=56676 Score = 116 bits (128), Expect = 4e-21 Identities = 428/659 (65%), Gaps = 26/659 (4%) Strand=Plus/Minus Query 138187 CAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGTAAAT 138246 |||| || || | |||||||| ||||| || || ||||||||||| ||||| || |||| Sbjct 14637 CAATGGGGCCCATACCAGGACCACCACCGCCGTGAGGAATACAGAAAGTCTTGTGCAAAT 14578 Query 138247 TTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCATTTA 138306 | | || || ||||| |||||| || || || | || || | || ||||| | Sbjct 14577 TCATGTGGCAAACATCAGCACCAATTTCGGCAGGCTTAGTTAATCCAATTTGAGCATTCA 14518 Query 138307 GATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATCTGTC 138366 || |||||||| || || ||| ||||||||| ||||||| ||||||||| | || || Sbjct 14517 AGTTAGCACCATCAAGGTAGACCAAACCACCATTATCATGAATGATCTTACA-AGCT-TC 14460 Query 138367 TG--ATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACATGAGAG 138424 | | || |||||| | |||| || || ||||| || ||||| ||| || Sbjct 14459 AGAAACACCTGCTTCAAAGATACCAAAGGTAGAAGGATAGGTGATCAT--CACAGCAG-- 14404 Query 138425 TTCAAATGTATTCATGATTGCTTT-----CTT---CTCTAGATCTTTGATGTCTATGTTG 138476 | ||| ||| | || |||||| ||| || | ||||| || || | || Sbjct 14403 --CTAATTTATCCTTG--TGCTTTTCAGCCTTTGCCTTCAAATCTTCCATATCCAAATTA 14348 Query 138477 CCATCATCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCACTAGCAGGA 138536 || | |||||||| || || || | ||| || | ||| | ||| ||||| Sbjct 14347 CCGTTGGAATCACACTGAACGATAACCACATCCATCCCGGACATAGCAGCAGAGGCAGGG 14288 Query 138537 TTAGTTCCATGTGCTGACTCTGGTATCAGACATACATTTCTTTTATCATCTCCTGATCCT 138596 || || || ||||| || || |||||||| ||||| | || | || || | Sbjct 14287 TTGGTACCGTGTGCAGAGATAGGAATCAGACAGACATTACGTTCAGTTTCACCACGAGCA 14228 Query 138597 TGATGATATGCTTGGATTGCTAACAGTCCTGCATACTCACCCTGTGATCCTGCGTTAGGT 138656 || || || || | || | || || ||||| ||||| || | || | ||| || Sbjct 14227 TGGTGGTAAGCACGAATAACACGAAGACCGGCATATTCACCTTGAGCACCAGAGTTTGGC 14168 Query 138657 TGTAATGATATAGAATCAAAACCTGTGATATC--ACATAACCATTTCTGTAAG-TCATCT 138713 || | || | | |||||||| || || || || || || || | ||| ||||| Sbjct 14167 TGAAGAGAGACACCTTCAAAACCAGTAATCTCTTTCA-AATCA--TCGGCAAGTTCATCC 14111 Query 138714 ATTATCTTTTGATAACCCATGGTCTGTATCATAGGTGTATGTGGATGCACGTTGGCAAAT 138773 | || | ||||||| || ||| | ||| | | || || | |||||| || Sbjct 14110 AACATGGTAAGATAACCTTCTGTTTGTTCAACAGGAGCAAAAGGGTGAATGTTGGCGAAC 14051 Query 138774 TCTTCCCATGACACAGGCATCAGTTCTGCTGCTGCATTTAGTTTCATTGTGCAACTACC 138832 || ||||| ||||| |||| ||| | || ||||| | ||||| || |||||||| Sbjct 14050 TCGGGCCATGTGACAGGAATCATTTCAGTTGTAGCATTCAACTTCATAGTACAACTACC 13992 Score = 93.3 bits (102), Expect = 5e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 139856 CAGCATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAA 139915 || ||| || ||||| ||||| || ||||||| || |||||||| || || || || || Sbjct 12848 CAACATGGCTTCTGCAGCTGCTGTACCTTCATCCAAAAGAGATGCATTGGCAATAGGCAA 12789 Query 139916 TCCTGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGA 139975 ||| || | || |||| || ||||||||||| || | || ||| || | || ||||| Sbjct 12788 TCCAGTTAAATCGGTGACTAGTGTTTGGTAATTCAACAGAGATTCTAAACGACCTTGAGA 12729 Query 139976 TATCTCAGCTTGATAGGGAGTGTA 139999 || |||| ||| || ||||| || Sbjct 12728 AATTTCAGGTTGGTAAGGAGTATA 12705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578978033731280