Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq2120 244 1e-59 seq2204 241 2e-58 >seq2120 Length=25072 Score = 244 bits (270), Expect = 1e-59 Identities = 399/568 (70%), Gaps = 10/568 (2%) Strand=Plus/Minus Query 47758 TCAACAAACTGACGGACAGAATATTGATTTC--CTGTGGCAATAACAAAATCATCAGGTT 47815 |||||||| |||||||| | | | |||| | || || | ||||| || | ||| | Sbjct 11721 TCAACAAAGCTACGGACAG--TGTGGGTTTCACCAGTAGCCAAGACAAAGTCTTGAGGCT 11664 Query 47816 CTTCTTGTTGAAGCATTAACCACATAGCCTCGACATAATCTCTGGCATGTCCCCAGTCAC 47875 |||||||||||||| | ||||||| | || |||||||| | |||||| ||||| |||| Sbjct 11663 TGTCTTGTTGAAGCATGAGCCACATACCTTCAACATAATCACGGGCATGACCCCAATCAC 11604 Query 47876 GAAGTGCATCAAGATTTCCTAGATATAAACAGTCTTGCTTACCTTCAGAGATTGCTTTTA 47935 | ||||||| || || || || | ||||||||| ||| | || | | Sbjct 11603 GCTTGGCATCAATGTTACCAAGGTAGAGACAGTCTTGACGACCCAAATGAATATCAGCAA 11544 Query 47936 ATGCTCTTGTAATCTTACGAGTTACAAAAGTTTCACCACGTCTTGGAGATTCATGATTAA 47995 || | ||||||||||| || || ||||| |||||| | |||||||| || || | Sbjct 11543 CAGCACGAGTAATCTTACGTGTGACGAAAGTACGACCACGACGAGGAGATTCGTGGTTGA 11484 Query 47996 AAAGAATACCACTACAGGCATACATTCCGTATGATTCACGATAGTTCTTTACTATCCAGT 48055 | || ||||| ||||||||||||| | || |||||||| ||||| ||| ||||||| Sbjct 11483 AGAGGATACCGTTACAGGCATACATGTCATAGGATTCACGGTAGTTGACTACAATCCAGT 11424 Query 48056 ACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTGTCT 48115 | |||||||| || ||||||||||| |||||||| || || || |||||||| || | | Sbjct 11423 AACCATAGAGCTTGGCAACACCATAGGGAGAACGAGGGTAAAATGGTGTGGTTTCCTTTT 11364 Query 48116 GTGGAGTCTCTTGCACCTTACCATAAAGTTCACTGGTGGATGCTTGATAGATACGAACCC 48175 | || || || |||||||| || |||||| ||| || ||||| |||| |||||| | Sbjct 11363 GAGGGGTTTCGACAACCTTACCGTAGAGTTCAGAGGTAGAAGCTTGGTAGAAACGAACAC 11304 Query 48176 TATCTTC--CATCTCAAGCAAACGGACTGCCTCAAGCACTCTCAGGGTGCCTATGGCATC 48233 || | | | |||| ||||| || || | | | || || || | |||||| Sbjct 11303 GGTCAGCAAGACCACAAG--TACGGATGGCATCCAAGAGACGAAGAGTACCAAGGGCATC 11246 Query 48234 TGTCTGACCAGTATACTCGGGCATCTCAAACGAAACCTTTACATGACTCTGTGC-CCCAA 48292 | |||||| || || | ||| || || |||||||| || ||| || || |||| Sbjct 11245 AACATCACCAGTGTATTCAGACATATCGAAAGAAACCTTGACGTGAGATTGAGCAGCCAA 11186 Query 48293 GATTATAAATCTCATCTGGTTGAACCTG 48320 | || || | ||| |||||||| || Sbjct 11185 G-TTGTATACTTCAGTGGGTTGAACTTG 11159 >seq2204 Length=21180 Score = 241 bits (266), Expect = 2e-58 Identities = 498/734 (68%), Gaps = 13/734 (2%) Strand=Plus/Minus Query 47554 ACCAATTGTTTAAAAGAAGTTTTAGGTTCCCAACCCAATTTTTTCTTTGCCTTAGAGGCA 47613 ||||| | | ||||||| ||| | | ||| ||||||| | |||||||||| | | Sbjct 6927 ACCAAATCATCAAAAGAAACCTTACGCTTCCAGCCCAATTGAGTATTTGCCTTAGTAGGA 6868 Query 47614 TCACCTAATAAGGTCTCTACTTCAGCAGGACGGAAATATTTAGAGTCAATTCTGATAACC 47673 || || || || || |||||||||||||| || || || | ||| || | | | Sbjct 6867 TCGCCCAACAACAAATCAACTTCAGCAGGACGAAAGTACTTGGGGTCGATACGAACACGA 6808 Query 47674 GTTTTACCA---TCAGAATCAATACCAACTTCATCAAGACCAGAACCTTCCCATCTAATA 47730 | || || || ||| |||||| || | || ||| |||||||||| |||| Sbjct 6807 ATCTTGCCCGAGTCCTTATCGCGACCAACCTCGTTAACACCTTCACCTTCCCATACAATA 6748 Query 47731 TTCATATCAAAATAAGGTGCAGATTCCT--CAACAAACTGACGGACAGAATATTGATTTC 47788 | | || ||| || | | | | ||||||| | ||| | || | || Sbjct 6747 GTACGACCAG--TAACCTGGAAAGCCTTTTCAACAAAACTTCTGACTGTATGCGTTTCTC 6690 Query 47789 CTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCGA 47848 | ||||| | ||||| || ||||| | |||||||||||||| | |||||| | |||| Sbjct 6689 CCGTGGCTAAGACAAAGTCGTCAGGCTTCTCTTGTTGAAGCATAAGCCACATTCCTTCGA 6630 Query 47849 CATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACAGT 47908 |||||||| ||||| ||||| ||||| || |||| ||| || | ||| ||||| | Sbjct 6629 TATAATCTCGAGCATGACCCCAATCACGCTTGGCGTCAATATTGCCCAAATACAAACATT 6570 Query 47909 CTTG-CTTACCTTCAGAGATTGCTTTTAATGCTCTTGTAATCTTACGAGTTACAAAAGTT 47967 |||| | | || || || | | || ||||||||||||| || ||||| || Sbjct 6569 CTTGACGTCCCAAATGA-ATATCAGCAACAGCATTTGTAATCTTACGTGTGACAAAGGTA 6511 Query 47968 TCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCCGTAT 48027 ||||| | ||||||||||||||||| ||||| ||| | || | |||||| | || Sbjct 6510 CGGCCACGACGAGGAGATTCATGATTAAAGAGAATGCCATTGCATGTATACATCTCATAA 6451 Query 48028 GATTCACGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAA 48087 |||||||| || || || ||||| || ||||| || |||||||||||||| || ||| Sbjct 6450 GATTCACGGTAATTGACAACGATCCAATAGCCATAAAGCTTTGCAACACCATAGGGTGAA 6391 Query 48088 CGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTTCA 48147 || || |||||||| ||||| || | || || || || ||||| || || | |||| Sbjct 6390 CGAGGGTAGAAAGGCGTGGTTTCCTTTTGAGGCGTTTCGACAACCTTTCCGTACAATTCA 6331 Query 48148 CTGGTGGATGCTTGATAGATACGAACCCTATCTTCCA--TCTCAAGCAAACGGACTGCCT 48205 || || |||||||||| ||||| | ||| | | |||| ||| || || | Sbjct 6330 GAAGTAGAAGCTTGATAGAAGCGAACACGATCGGAGAGGCCGCAAG--TACGAACAGCAT 6273 Query 48206 CAAGCACTCTCAGGGTGCCTATGGCATCTGTCTGACCAGTATACTCGGGCATCTCAAACG 48265 | | || | || || || | ||||| | ||| |||||||| | ||| ||||| | Sbjct 6272 CTAACAGACGGAGTGTACCGAGTGCATCAACATCACCTGTATACTCAGACATATCAAATG 6213 Query 48266 AAACCTTTACATGA 48279 | ||||| |||||| Sbjct 6212 ATACCTTGACATGA 6199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665470991234480