Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq2078 140 6e-28 seq2232 86.0 1e-11 >seq2078 Length=27221 Score = 140 bits (154), Expect = 6e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| |||||||| | ||||| ||||| || || ||||| |||| | | | | Sbjct 1070 CGAAGCACCAGATGTAGTGTAGATTCTTTCTGGATGTTGTAGTCTGATAGAGAGCGACCA 1129 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || ||||||||||| ||||||||||| | | |||||| || || || || ||||||||| Sbjct 1130 TCTTCTAATTGTTTGCCGGCAAAAATAAGACGCTGTTGGTCTGGTGGAATACCTTCTTTA 1189 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || || | ||| ||||| ||| || || || |||||||| || || Sbjct 1190 TCTTGAATCTTTTGCTTGACGTTTTCAATAGAATCAGAGGATTCGACTTCTAGTGTGATT 1249 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| || || || ||||| |||||||| Sbjct 1250 GTTTTGCCTGTGAGTGTCTTCACAAAGATTTGCAT 1284 Score = 129 bits (142), Expect = 1e-24 Identities = 172/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||||||||| | ||||| |||||||| | ||||| ||||| || || Sbjct 1277 ATTTGCATACCACCTCTAAGACGAAGCACCAGATGTAGTGTAGATTCTTTCTGGATGTTG 1336 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| ||||| | | ||| |||| ||| ||||| || ||||| || | |||||| Sbjct 1337 TAGTCTGATAAAGAGCGGCCATCTTCTAGTTGCTTTCCTGCGAAAATCAAACGTTGTTGA 1396 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || ||||| || ||||| || || || | ||| ||| | ||| || Sbjct 1397 TCTGGTGGAATACCTTCCTTGTCTTGAATCTTTTGCTTAACGTTTTCAATTGAATCAGAG 1456 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || |||||||| || || || |||||||| || || || || || || |||||||| || Sbjct 1457 GATTCAACTTCAAGGGTAATGGTTTTACCAGTGAGGGTCTTGACGAAAATTTGCATATT 1515 >seq2232 Length=20840 Score = 86.0 bits (94), Expect = 1e-11 Identities = 163/240 (68%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | | ||||| |||| || | |||| ||||| ||||| Sbjct 734 ATTTGCATACCACCACGAAGACGAAGAACCAAGTGAAGGGTAGATTCTTTTTGGATATTG 793 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| || | | | ||| ||||||||||| || ||||| || | | ||||| Sbjct 794 TAGTCAGAAAGAGAACGGCCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGTTGG 853 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || ||||| || ||||| || || || | || ||| | ||||| Sbjct 854 TCTGGGGGGATACCTTCCTTGTCTTGGATCTTTTGCTTGACGTTCTCAATGGAGTCGGAG 913 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTA 193364 || || ||||| | ||| || || ||||| || || || || || || |||||||| ||| Sbjct 914 GATTCGACTTCCAAAGTGATGGTCTTACCAGTGAGGGTCTTAACGAAAATTTGCATGTTA 973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899622754656480