Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq2078 127 4e-24 seq2232 111 3e-19 >seq2078 Length=27221 Score = 127 bits (140), Expect = 4e-24 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||||||||| || | || | ||||| |||| ||||| || || || ||| Sbjct 1283 ATACCACCTCTAAGACGAAGCACCAGATGTAGTGTAGATTCTTTCTGGATGTTGTAGTCT 1342 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 |||||||| || | || || | ||| || || || ||||| || | ||||| || ||| Sbjct 1343 GATAAAGAGCGGCCATCTTCTAGTTGCTTTCCTGCGAAAATCAAACGTTGTTGATCTGGT 1402 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || || | || || || || | ||| || ||||| Sbjct 1403 GGAATACCTTCCTTGTCTTGAATCTTTTGCTTAACGTTTTCAATTGAATCAGAGGATTCA 1462 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||| || ||||||||||||||||| | || || | ||| || ||||| || Sbjct 1463 ACTTCAAGGGTAATGGTTTTACCAGTGAGGGTCTTGACGAAAATTTGCATATT 1515 Score = 120 bits (132), Expect = 5e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 171866 ATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTG 171925 ||||| |||| ||||| || || || ||||||| ||| || | || || ||||| Sbjct 1081 ATGTAGTGTAGATTCTTTCTGGATGTTGTAGTCTGATAGAGAGCGACCATCTTCTAATTG 1140 Query 171926 TTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTT 171985 ||| || |||||||| | | ||||||||| ||||| || |||||||||||||| || || Sbjct 1141 TTTGCCGGCAAAAATAAGACGCTGTTGGTCTGGTGGAATACCTTCTTTATCTTGAATCTT 1200 Query 171986 ATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 172045 | || || || |||| ||| || ||||| |||||||| || || ||||| || || Sbjct 1201 TTGCTTGACGTTTTCAATAGAATCAGAGGATTCGACTTCTAGTGTGATTGTTTTGCCTGT 1260 Query 172046 TAATGTTTTAATGAATATCTGCAT 172069 | ||| || | || || ||||| Sbjct 1261 GAGTGTCTTCACAAAGATTTGCAT 1284 >seq2232 Length=20840 Score = 111 bits (122), Expect = 3e-19 Identities = 165/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| || | || || || | |||| ||||| ||||| || || Sbjct 740 ATACCACCACGAAGACGAAGAACCAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCA 799 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | ||| || | || || ||||||||||||||||| || | | |||||||| || Sbjct 800 GAAAGAGAACGGCCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGTTGGTCTGGG 859 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || || | || || || || | || || ||||| Sbjct 860 GGGATACCTTCCTTGTCTTGGATCTTTTGCTTGACGTTCTCAATGGAGTCGGAGGATTCG 919 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTA 172073 ||||| | ||| ||||| |||||||| | || |||| ||| || ||||| ||| Sbjct 920 ACTTCCAAAGTGATGGTCTTACCAGTGAGGGTCTTAACGAAAATTTGCATGTTA 973 Score = 100 bits (110), Expect = 5e-16 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | ||| || | || || || | |||| ||||| ||||| || || || Sbjct 286 ACCACCACGAAGACGAAGAACCAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCAGA 345 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | ||| || | || || ||||||||||||||||| || | | |||||||| || || Sbjct 346 AAGAGAACGGCCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGTTGGTCTGGGGG 405 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || ||||| || ||||| || || | || || || || | || || ||||| || Sbjct 406 RATACCTTCCTTGTCTTGGATCTTTTGCTTGACGTTCTCAATGGAGTCGGAGGATTCGAC 465 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||| | ||| || || || ||||| | || |||| || |||||||| Sbjct 466 TTCCAAAGTMATAGTCTTGCCAGTAAGAGTCTTAACRAAAATCTGCAT 513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905104161841200