Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq244 174 5e-38 seq1825 136 1e-26 seq2166 96.9 1e-14 seq2381 84.2 6e-11 seq2253 84.2 6e-11 >seq244 Length=4003 Score = 174 bits (192), Expect = 5e-38 Identities = 490/747 (66%), Gaps = 9/747 (1%) Strand=Plus/Plus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 |||||| ||||| || |||| |||| || |||||| || || || || | |||||| Sbjct 2033 GTATTCAACAATTTCTGTACACAAGTTACTACACTTGATAGTACCCAAGTTTTGCTGGTT 2092 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 | || |||||||| |||||||| || || ||| |||| | || || || | || || Sbjct 2093 ACTCTTTCTGTTACAGGCATCCTTATAGAGCATGAATGGATTACCGGTTTCAGTTTGAGC 2152 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGT-TGTATCTGCCTTCCG 155808 || || || ||| | | | || || ||| | || | | |||||||||| Sbjct 2153 TTCAAGGATAGCATACCACAATTTTTGTGCCTTGATT-GTTTCTCTAGCTCTGCCTTCCT 2211 Query 155809 ACTCATA--TTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGG 155866 ||||| |||| |||| || | || ||||| | |||| |||||||| Sbjct 2212 TTTCATACTTTTCGTATAATGCAACAAAT--TCATCACCCCATACTTCACAAAGTCCAGG 2269 Query 155867 GCACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATAC 155926 | || || || |||| ||||| ||| | |||||||||||| || | Sbjct 2270 AGCTTCATTAGGACAGAACAAGGACCATTCACCATTGTCACGTACACGCTCCATGAAGAG 2329 Query 155927 ATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATT 155986 |||| |||||| ||||||||| | ||| | || | || || | || || Sbjct 2330 ATCAGGTACCCAAAGAGCATAGAACAAGTCACGAGCTCTAATTTCATCTTTACCAAAGTT 2389 Query 155987 CTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAA 156046 ||| | | |||||||| ||||||||| || ||| |||| ||||||||||| Sbjct 2390 CTTTCTCAAATCTAAGAAAGTGAAAATATCAGGGTGCCATGGTTCCAAGTACATAGCAAA 2449 Query 156047 ACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACC 156103 ||| | |||| ||||||||||| ||||| |||||||| || |||||||||| Sbjct 2450 GGCACCGGGACGCTTGTTACCACCCTGATCAACATAACGAGCAGTATTGTTGAAGACACG 2509 Query 156104 TAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGA 156163 | ||| || | || ||||| ||| || || || || ||||| || ||| | Sbjct 2510 CAACATGGGCAAAAGGCCATTAGAATAACCGTTAGTACCAGCAATATAAGAGCCATTGGC 2569 Query 156164 GCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTC 156223 |||| || || | | | || |||||||| | |||||||||||||| || Sbjct 2570 ACGAATGTTGTGCACGTTCAAACCGATACCACCAGCAGTCTTAGAAATTTGAGCACAAAT 2629 Query 156224 CTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGA 156283 |||| || | | | |||||||| ||||||||||| | ||| | | | |||| || Sbjct 2630 TTTTAAGGTTTCGTAGATACCTTCGATAGAATCATCCTTCATAGTCAACAAGAAGCAAGA 2689 Query 156284 ACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATA 156343 | | |||||| || || || ||||| ||||| || ||||| | |||||| |||| || Sbjct 2690 AGACATTTGAGGACGAGGAGTACCAGCATTGAAAAGAGTAGGACTGGCATGAGTAAAGTA 2749 Query 156344 CTTATTAGACATATAATCGTATGTCTC 156370 | ||||||| | ||||||||| Sbjct 2750 ACGTTCAGACATAAGGTTGTATGTCTC 2776 >seq1825 Length=31147 Score = 136 bits (150), Expect = 1e-26 Identities = 313/465 (67%), Gaps = 11/465 (2%) Strand=Plus/Plus Query 155912 ACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTC 155971 |||||||||||| | |||| |||||| | | |||| | || | || | || Sbjct 9275 ACGCTCCATAAAGAGATCAGAAACCCAAAGACCCAAGAACAAATCACGAGCACGTACTTC 9334 Query 155972 CTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTC 156031 ||| | || |||||||| | ||| || || || || | |||| ||| || || Sbjct 9335 ATCAGCACCTTGATTCTTTCTTAGTTCCAAAAAGTCAAAGACATCAATATGCCAAGGTTC 9394 Query 156032 CAGATACATAGCAAAACTACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGT 156088 || ||||| ||||| ||||||| | ||| ||||| ||| |||| | ||||| || Sbjct 9395 AAGGTACATGGCAAAGTTACCATTACGCTTACCACCACCTTGAGTTACAAAACGAGCTGT 9454 Query 156089 CTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAAT 156148 | ||| ||||||| |||||||| | |||||||||||| || |||||||| || ||| Sbjct 9455 GTCATTAAAGACACGAAGCATAGGCACAATACCATTGGATGTACCATTGGTACCAGCAAT 9514 Query 156149 ATGCGAACCAGATGAGCGAACATTATGAATATG-TAGTCCAATACCACCTGACCATTTAG 156207 | |||||||| || | || || | ||| | || | |||||| | ||||| Sbjct 9515 GTAAGAACCAGAGCCACGGATCTTTTGGA-ATGAGACACCGACACCACCAGCAGCTTTAG 9573 Query 156208 AAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT-T 156266 | || |||| || ||| ||| | | |||||||| ||| ||| |||| ||| | Sbjct 9574 AGATACGAGCACAGGTTGTTAAAGTGTCATAGATACCTTCGATACTATCTTCTTTCATCT 9633 Query 156267 G--ATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAG 156324 | || | | ||| || ||||||||| ||||| || || ||||| || || | Sbjct 9634 GGACAAGGAAACAGCTGGA---TAATTGAGGCTTAGGTGTACCCGCATTGAAGAGGGTGG 9690 Query 156325 GTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCT 156369 |||| |||||| | ||||| || ||||| ||||||||||| Sbjct 9691 GTGTAGCATGAGTGAAATATTTGGAGGACATGAGATCGTATGTCT 9735 >seq2166 Length=23049 Score = 96.9 bits (106), Expect = 1e-14 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 301864 ACACCAGCAAAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGT 301923 ||||||||| ||||||||||||||| || | ||| |||| || ||||||||| ||| Sbjct 1576 ACACCAGCATAGTGGAAAGTATTCAAGGTCATTTGTGTAGCAGGTTCACCAATAGATTGA 1635 Query 301924 GCCGCAATCATACCAACCATTTCTCCTGGTGCTACAATAGA 301964 || |||||| ||||||||||||| || || || ||||| || Sbjct 1636 GCGGCAATCGTACCAACCATTTCACCAGGAGCAACAATGGA 1676 Score = 91.5 bits (100), Expect = 4e-13 Identities = 197/289 (68%), Gaps = 8/289 (3%) Strand=Plus/Plus Query 302592 ACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACG 302651 |||||| || |||||||| ||| || ||| || || ||||||||||| | ||| |||| Sbjct 2325 ACGACGTTGGATATAACCTGTTTCAGCTGTCTTGACGGCTGTATCAATCAAACCTTCACG 2384 Query 302652 ACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT--AGCCCCCCAATAAAGGAGCTC 302709 |||||||||||| |||||||| | || || ||| | || | ||| ||||| | Sbjct 2385 ACCACCCATAGCGTGGAAGAAGAATTCGGTAGG-CGTCAAACCTCTCAA-GTAGGAGTTT 2442 Query 302710 TCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTG 302769 ||||| |||||||| || || | || ||| | || || || | || | | Sbjct 2443 TCAACAAAACCACGACTTTCAGGACTGTGATCATCCTTTGAGAAATGCGGTAATGTACGG 2502 Query 302770 TTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATC 302829 || | || || || ||||| || || || |||||||| || || | || | | | Sbjct 2503 AACTTGAAACCATAAGGAATACGTTTACCTTCCACGTTCTGTTGACCAACACAAGCAGAC 2562 Query 302830 ATCTGCGAAATATTTAAATCACTG--CCCTTGGAGCCAGCATTTACCAT 302876 || || || ||||| ||| | || ||||| || |||||| | ||||| Sbjct 2563 ATTTGAGAGATATT--AATGAATGAACCCTTTGAACCAGCAATAACCAT 2609 >seq2381 Length=15399 Score = 84.2 bits (92), Expect = 6e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 133498 TTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTT 133557 ||||||| || | ||||| ||||||| || || || || || ||| |||| | || Sbjct 11068 TTTTGCTGAGCGATTGGTTGCCTTTGCTGCTGTCGAAGGTATCTTCTTCTCTGGTTCATT 11009 Query 133558 CTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGA 133617 |||||| || ||||| || ||||||||| | | ||||| || ||| |||||||| Sbjct 11008 TGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTTTGACTTTCTCTAACGA 10949 Query 133618 ACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC 133656 |||||| | | || || | |||||||| || ||||| Sbjct 10948 ACTTATCTGTCGTGATGAAGGTCTTCACACTGACTTTGC 10910 >seq2253 Length=19264 Score = 84.2 bits (92), Expect = 6e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 289027 TTACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATT 289086 ||||||| ||||||||||| || | || || | ||| |||| || | | || | Sbjct 13973 TTACCAATCGCATCAATTTCATCTACAAAGATGATACAAGGAGCGTTCTTCTTGGCTGTA 14032 Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 ||||| || || | || || |||| || | || ||| |||| |||||||||||||| Sbjct 14033 GCAAACAAATCCCGCACTCGCGATGGACCGACGCCCACAAACATCTCTACAAATTCAGAT 14092 Query 289147 GCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 | || || | ||| | ||| ||| |||||||| ||| | |||| | ||| Sbjct 14093 CCAGAGACGCTATAGAAAGGCACACCTGCCTCGCCTGCGGTTGCTTTGGCCAACAATGTT 14152 Query 289207 TTACCTGTTCCAGGTGGTCCC 289227 |||||||| ||||| |||||| Sbjct 14153 TTACCTGTACCAGGAGGTCCC 14173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471764534536318