Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq2048 104 3e-16 seq1585 104 3e-16 >seq2048 Length=28636 Score = 104 bits (114), Expect = 3e-16 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| ||||| || | | ||| || || || || |||||||| || || | || Sbjct 1524 GCTTGGCAAGTTCACCAGGGAGGATGAGACGGACAGCAGTCTGGATTTCACGAGAAGAGA 1465 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||||| || |||| | ||| || | | | || || || | | Sbjct 1464 TGGTGGAACGCTTGTTGTAGGCAGCCAACTTGGAGGCTTCAGAGGCAATACGTTCAAAGA 1405 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | ||||||||||| ||||||| || ||||| | |||||||||||| || ||||||| Sbjct 1404 TATCGTTGACAAAGGAGTTCAAGATGGACATGGCCTTGTTGGAGATACCGGTATCGGGGT 1345 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 | || ||||| | |||||||||||| | || ||||| Sbjct 1344 GAACTTGCTTCAAGACCTTGTAGATGTAAGAAGAGTA 1308 >seq1585 Length=1238 Score = 104 bits (114), Expect = 3e-16 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| ||||| || | | ||| || || || || |||||||| || || | || Sbjct 166 GCTTGGCAAGTTCACCAGGGAGGATGAGACGGACAGCAGTCTGGATTTCACGAGAAGAGA 225 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||||| || |||| | ||| || | | | || || || | | Sbjct 226 TGGTGGAACGCTTGTTGTAGGCAGCCAACTTGGAGGCTTCAGAGGCAATACGTTCAAAGA 285 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | ||||||||||| ||||||| || ||||| | |||||||||||| || ||||||| Sbjct 286 TATCGTTGACAAAGGAGTTCAAGATGGACATGGCCTTGTTGGAGATACCGGTATCGGGGT 345 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 | || ||||| | |||||||||||| | || ||||| Sbjct 346 GAACTTGCTTCAAGACCTTGTAGATGTAAGAAGAGTA 382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106908269982038