Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq2078 127 2e-24 seq2232 120 3e-22 seq244 109 5e-19 seq1425 89.7 5e-13 >seq2078 Length=27221 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || || || |||||||| ||||| || ||||| ||| || | Sbjct 1512 ATGCAAATTTTCGTCAAGACCCTCACTGGTAAAACCATTACCCTTGAAGTTGAATCCTCT 1453 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || || |||||||| |||||||| ||||| || || || |||||| Sbjct 1452 GATTCAATTGAAAACGTTAAGCAAAAGATTCAAGACAAGGAAGGTATTCCACCAGATCAA 1393 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||||||||| || || || || || || || ||| | | ||||| || ||| Sbjct 1392 CAACGTTTGATTTTCGCAGGAAAGCAACTAGAAGATGGCCGCTCTTTATCAGACTACAAC 1333 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 || || || ||||| |||||||| ||||| Sbjct 1332 ATCCAGAAAGAATCTACACTACATCTGGTG 1303 >seq2232 Length=20840 Score = 120 bits (132), Expect = 3e-22 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || |||| || || || || || ||||| || | ||||| ||| || || Sbjct 513 ATGCAGATTTTYGTTAAGACTCTTACTGGCAAGACTATKACTTTGGAAGTCGAATCCTCC 454 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || ||||||||||||||||| ||||| || || || || ||| Sbjct 453 GACTCCATTGAGAACGTCAAGCAAAAGATCCAAGACAAGGAAGGTATYCCCCCAGACCAA 394 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | |||||||| || ||||| | || ||| | | || || || || Sbjct 393 CAACGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGCCGTTCTCTTTCTGACTACAAT 334 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || ||||| ||||| || || |||||||| Sbjct 333 ATCCAAAAAGAATCTACCCTTCACTTGGT 305 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || |||| || || || ||||| || || || | ||||| ||| || || Sbjct 969 ATGCAAATTTTCGTTAAGACCCTCACTGGTAAGACCATCACTTTGGAAGTCGAATCCTCC 910 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || ||||||||||||||||| ||||| || || || || ||| Sbjct 909 GACTCCATTGAGAACGTCAAGCAAAAGATCCAAGACAAGGAAGGTATCCCCCCAGACCAA 850 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | |||||||| || ||||| | || ||| | | || || || || Sbjct 849 CAACGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGCCGTTCTCTTTCTGACTACAAT 790 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || ||||| ||||| || || |||||||| Sbjct 789 ATCCAAAAAGAATCTACCCTTCACTTGGT 761 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || || || || ||||| || || | || || ||| | | Sbjct 741 ATGCAAATCTTTGTCAAGACTCTTACTGGCAAAACCATCACCTTAGAGGTTGAATCATCT 682 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || | | |||| ||||| ||||||||||||||||| ||||| || ||||| || ||| Sbjct 681 GATTCTATCGAAAATGTAAAGCAAAAGATCCAAGACAAGGAAGGCATYCCTCCAGACCAA 622 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | || || || || || ||| |||| || | | || || || ||| Sbjct 621 CAACGTCTCATTTTCGCTGGTAAGCAGTTGGAAGACGGCCGTTCTCTCTCTGACTACAAC 562 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || ||||| || || || |||||||| Sbjct 561 ATCCAGAAGGAGTCCACTCTTCACTTGGT 533 >seq244 Length=4003 Score = 109 bits (120), Expect = 5e-19 Identities = 588/938 (63%), Gaps = 19/938 (2%) Strand=Plus/Plus Query 139080 AATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGC 139139 ||| || || | ||| || || || ||||| || ||| |||||| |||||||| | Sbjct 1991 AATGGAAGCCAAGTTACAGACAGCAACTTCATCAGGGCTAGAGTATTCAACAATTTCTGT 2050 Query 139140 ACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGC 139199 |||||| |||||||||||||| ||||| || ||||| || || || |||| |||||| || Sbjct 2051 ACACAAGTTACTACACTTGATAGTACCCAAGTTTTGCTGGTTACTCTTTCTGTTACAGGC 2110 Query 139200 ATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAA 139259 ||| || || ||||| | || | || ||||| ||| | || | || | | Sbjct 2111 ATCCTTATAGAGCATGAATGGATTACCGGTTTCAGTTTGAGCTTCAAGGATAGCATACCA 2170 Query 139260 CAA-----GTCCCTAGCTTGTATTTGACGCACGTAAAGTTCGTCGCGCTCGTACTTTTCG 139314 ||| || ||| | |||| | | || | | || || ||||||||| Sbjct 2171 CAATTTTTGTGCCTTGATTGTTTCTCTAGCTC-----TGCCTTCCTTTTCATACTTTTCG 2225 Query 139315 TAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACAC 139374 || | | | | ||| ||||| | | ||| |||| | || | | |||||| Sbjct 2226 TATAATGCAACAAATTCATCACCCCATACTTCACAAAGTCCAGGAGCTTCATTAGGACAG 2285 Query 139375 ATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAA 139434 | | |||||| | || || | || ||| |||||| ||||| || | ||| | | Sbjct 2286 AACAAGGACCATTCACCATTGTCACGTACACGCTCCATGAAGAGATCAGGTACCCAAAGA 2345 Query 139435 GCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGG 139494 || | | ||| || || || | | || || ||| | ||| | ||| | | | Sbjct 2346 GCATAGAACAAGTCACGAGCTCTAATTTCATCTTTACCAAAGTTCTTTCTCAAATCTAAG 2405 Query 139495 AAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTG 139554 ||| |||| |||| |||||||||||||| || || || | || || || ||| Sbjct 2406 AAAGTGAAAATATCAGGGTGCCATGGTTCCAAGTACATAGCAAAGGCACCGGGACGCTTG 2465 Query 139555 ---CCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGA 139611 ||||| ||||| || | || ||| ||| ||||| || |||||||| ||| || Sbjct 2466 TTACCACCCTGATCAACATAACGAGCAGTATTGTTGAAGACACGCAACATGGGCAAAAGG 2525 Query 139612 CCGCTCGCTGTTCCGTTGGTGCTACGGAT---GGGACTGTTGCGAGCTCGGACGTCATGT 139668 || | | ||||| || | | || | | ||| || || | || || Sbjct 2526 CCATTAGAATAACCGTTAGTACCAGCAATATAAGAGCCATTG---GCACGAATGTTGTGC 2582 Query 139669 ACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGTAATGTCTCG 139728 || || | ||||| || || || || || ||| | | ||| ||| || ||| Sbjct 2583 ACGTTCAAACCGATACCACCAGCAGTCTTAGAAATTTGAGCACAAATTTTTAAGGTTTCG 2642 Query 139729 TATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGT 139788 || |||||| || || |||| ||| || | || ||||| || || | ||| || Sbjct 2643 TAGATACCTTCGATAGAATCATCCTTCATAGTCAACAAGAAGCAAGAAGACATTTGAGGA 2702 Query 139789 AGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATC 139848 | || || || || ||||||||||| || || || || ||| ||||| Sbjct 2703 CGAGGAGTACCAGCATTGAAAAGAGTAGGACTGGCATGAGTAAAGTAACGTTCAGACATA 2762 Query 139849 AATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGC 139908 | | ||| || || |||||| | ||||| | || || ||||| |||| || ||| Sbjct 2763 AGGTTGTATGTCTCAATGGCGGCATCGATATCGTTGCCATGAATACCAACAGCAACACGC 2822 Query 139909 ATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATAACCGTTC 139968 || | || |||||| | ||| || ||| || | ||| || || ||| | Sbjct 2823 ATGATCAAATGTTGTGGTCTTTCAGCAACCTTACCATTGATCTTGAGCAAGTAAGAACGC 2882 Query 139969 TCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATC 140006 || || |||||| | |||||| | | || |||||||| Sbjct 2883 TCGAGTGTCTTGAAACCAAAGAAATTGTATTTGAAATC 2920 >seq1425 Length=32788 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || || |||||||| |||||||| ||||| || || || || ||||||||| | |||||| Sbjct 31334 GTCAAGCAAAAGATTCAAGACAAGGAAGGTATTCCCCCAGACCAACAACGTCTTATCTTT 31275 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCG 24898 || || || || |||| ||| | | || || || ||||| ||||||||||| Sbjct 31274 GCTGGTAAGCAATTGGAAGATGGTCGTTCTCTTTCYGACTACAACATCCAAAAGGAATCT 31215 Query 24899 ACACTACACTTGGT 24912 || || |||||||| Sbjct 31214 ACCCTTCACTTGGT 31201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449881774851920