Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1585 141 1e-27 seq2048 136 6e-26 seq2381 107 3e-17 >seq1585 Length=1238 Score = 141 bits (156), Expect = 1e-27 Identities = 178/242 (74%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || ||||||||||| || |||||||||||| |||| ||||| || | | Sbjct 127 TGTACTTGGTAACAGCCTTGGTACCTTCAGAGACGGCGTGCTTGGCAAGTTCACCAGGGA 186 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||| || || || || |||||||| || || | ||| ||| |||||||| || Sbjct 187 GGATGAGACGGACAGCAGTCTGGATTTCACGAGAAGAGATGGTGGAACGCTTGTT-GTAG 245 Query 1485590 GC-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 || |||| | ||| || | | | || || || | || ||||||||||| |||||| Sbjct 246 GCAGCCAACTTGGAGGCTTCAGAGGCAATACGTTCAAAGATATCGTTGACAAAGGAGTTC 305 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 | ||| ||||| | ||||||||||| || |||||||| || ||||| | |||||| Sbjct 306 AAGATGGACATGGCCTTGTTGGAGATACCGGTATCGGGGTGAACTTGCTTCAAGACCTTG 365 Query 1485709 TA 1485710 || Sbjct 366 TA 367 >seq2048 Length=28636 Score = 136 bits (150), Expect = 6e-26 Identities = 177/242 (73%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || |||||||| || || |||||||||||| |||| ||||| || | | Sbjct 1563 TGTACTTGGTAACAGCCTTGGTGCCTTCAGAGACGGCGTGCTTGGCAAGTTCACCAGGGA 1504 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||| || || || || |||||||| || || | ||| ||| |||||||| || Sbjct 1503 GGATGAGACGGACAGCAGTCTGGATTTCACGAGAAGAGATGGTGGAACGCTTGTT-GTAG 1445 Query 1485590 GC-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 || |||| | ||| || | | | || || || | || ||||||||||| |||||| Sbjct 1444 GCAGCCAACTTGGAGGCTTCAGAGGCAATACGTTCAAAGATATCGTTGACAAAGGAGTTC 1385 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 | ||| ||||| | ||||||||||| || |||||||| || ||||| | |||||| Sbjct 1384 AAGATGGACATGGCCTTGTTGGAGATACCGGTATCGGGGTGAACTTGCTTCAAGACCTTG 1325 Query 1485709 TA 1485710 || Sbjct 1324 TA 1323 >seq2381 Length=15399 Score = 107 bits (118), Expect = 3e-17 Identities = 228/336 (68%), Gaps = 16/336 (5%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTT-GCTAAAG-CAGAGGCCGGGCATGAGGCCGCGC 794397 |||||| || |||| ||| | |||||| | |||| || | || |||||||| || ||| Sbjct 10927 ACCTTCATCACGACAGATAAGTTCGTTAGAGAAAGTCAAA--CCAGGCATGAGACCACGC 10984 Query 794398 TTCTTGAGCCAAAAGAT---GGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCG 794454 ||||||||||| ||||| |||| | || || ||||| ||||| || ||||| || Sbjct 10985 TTCTTGAGCCAGAAGATAGAGGCAAATGAA---CCAGAGAAGAAGATACCTTCGACAGCA 11041 Query 794455 GCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATC 794514 |||||| | || | ||||| ||||||| ||| || ||||||||| | Sbjct 11042 GCAAAGGCAACCAATCGCTCAGCAAAAGAGTCGTTACC------AGAGATCCACTTGAAT 11095 Query 794515 GCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCC 794574 ||||| |||||||| | | | |||| | || ||||| || ||| | ||| Sbjct 11096 GCCCAATCTGCCTTACGCTTGATACAGGGAATGGTTTCGATAGCATCAAACAACATCTCC 11155 Query 794575 TTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATG 794634 || || || |||| ||||||||| || | | |||||| || | |||||| Sbjct 11156 TTTTCTTGATTATCTTTGATGTAGGTGTCAATCAACAAACTGTAGGTTTCGGCATGGATG 11215 Query 794635 TTTTCGATGGCGATCTGGAAGCCATAAAAGCAGTTG 794670 || || || || || ||||| ||||| || || ||| Sbjct 11216 TTCTCAATAGCAATTTGGAAACCATAGAAACATTTG 11251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915947061985346