Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq2078 114 8e-21 seq2232 96.9 2e-15 >seq2078 Length=27221 Score = 114 bits (126), Expect = 8e-21 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 || ||||| ||||| ||||| |||| ||| |||| || ||||||||||| ||||| Sbjct 1322 TCTTTCTGGATGTTGTAGTCTGATAAAGAGCGGCCATCTTCTAGTTGCTTTCCTGCGAAA 1381 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| ||||| || ||| | || | || |||||||| | || ||||| || ||| | Sbjct 1382 ATCAAACGTTGTTGATCTGGTGGAATACCTTCCTTGTCTTGAATCTTTTGCTTAACGTTT 1441 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || || ||| || || || |||| ||| ||||| || || ||||||||||| || Sbjct 1442 TCAATTGAATCAGAGGATTCAACTTCAAGGGTAATGGTTTTACCAGTGAGGGTCTTGACG 1501 Query 34967 AAGATCTGCAT 34977 || || ||||| Sbjct 1502 AAAATTTGCAT 1512 >seq2232 Length=20840 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| ||| || || || || || ||||| || || || |||| Sbjct 758 AGAACCAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCAGAAAGAGAACGGCCATCT 817 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || | ||| || || || ||||| || ||||| |||||| | || | || |||||||| Sbjct 818 TCTAATTGTTTACCAGCAAAGATAAGACGTTGTTGGTCTGGGGGGATACCTTCCTTGTCT 877 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || ||||| |||||| | || || || || ||||| || | || |||||| Sbjct 878 TGGATCTTTTGCTTGACGTTCTCAATGGAGTCGGAGGATTCGACTTCCAAAGTGATGGTC 937 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATGATA 34981 || || ||||||||||| || || || |||||| || Sbjct 938 TTACCAGTGAGGGTCTTAACGAAAATTTGCATGTTA 973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325681630161866