Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_023423.1 Length=610033 Score E Sequences producing significant alignments: (Bits) Value seq1958 84.2 9e-11 >seq1958 Length=30361 Score = 84.2 bits (92), Expect = 9e-11 Identities = 117/162 (72%), Gaps = 3/162 (2%) Strand=Plus/Plus Query 309684 CTCCATCAACTTGGCGATAGTCATACGAGAAGGAATGGCAAGAGGGTTGATGAGAATGTC 309743 ||| ||||| | | || |||||||||||||||||||| |||| ||||| | | || Sbjct 18816 CTCGATCAAGTGACCAATGGTCATACGAGAAGGAATGGCGTGAGGATTGATAATCAAATC 18875 Query 309744 AGGTCTCATTCCGGTGATTGGGTTGAAAGGCATATCTTCTTCAGGTACAATCAAACCAAT 309803 |||| | || || | | | |||||| | |||||||| | | | | | |||||| Sbjct 18876 AGGTGTGATACCT-TCAGCAGA--GAAAGGAACATCTTCTTGACGATAAGTAATACCAAT 18932 Query 309804 AGTTCCCTTTTGAGCGTGCCTGGAAGCAAACTTGTCACCAAT 309845 || ||||||||| |||| | || |||||||||||||| || Sbjct 18933 GGTACCCTTTTGACCGTGACGAGAGGCAAACTTGTCACCCAT 18974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1951904022782992