Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq2232 167 5e-36 seq2078 150 4e-31 seq1425 123 5e-23 >seq2232 Length=20840 Score = 167 bits (184), Expect = 5e-36 Identities = 166/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| ||||| ||||| || ||||||||||| || ||||| || ||||| ||| | || Sbjct 298 ACGAAGAACCAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCAGAAAGAGAACGGCC 357 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||||| |||||| ||||||||||| || | |||||| ||||| || || |||||||| Sbjct 358 ATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGTTGGTCTGGGGGRATACCTTCCTT 417 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||| |||||| || || || ||||| | || | ||| ||||||||||| || Sbjct 418 GTCTTGGATCTTTTGCTTGACGTTCTCAATGGAGTCGGAGGATTCGACTTCCAAAGTMAT 477 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || | ||||| || || |||||||| Sbjct 478 AGTCTTGCCAGTAAGAGTCTTAACRAAAATCTGCAT 513 Score = 156 bits (172), Expect = 8e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| ||||| ||||| || ||||||||||| || ||||| || |||| Sbjct 741 TACCACCACGAAGACGAAGAACCAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCAG 800 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | || ||||||| |||||| ||||||||||| || | |||||| ||||| | Sbjct 801 AAAGAGAACGGCCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGTTGGTCTGGGG 860 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||| |||||| || || || ||||| | || | ||| | Sbjct 861 GGATACCTTCCTTGTCTTGGATCTTTTGCTTGACGTTCTCAATGGAGTCGGAGGATTCGA 920 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||||| || ||||| || || | ||||| || || || ||||| Sbjct 921 CTTCCAAAGTGATGGTCTTACCAGTGAGGGTCTTAACGAAAATTTGCAT 969 Score = 138 bits (152), Expect = 2e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || ||||| ||||| || || ||||| || || || |||| Sbjct 513 TACCACCACGAAGACGAAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAG 572 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | |||||||| | || || ||||| || || || | |||||| ||||||| Sbjct 573 AGAGAGAACGGCCGTCTTCCAACTGCTTACCAGCGAAAATGAGACGTTGTTGGTCTGGAG 632 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||| |||||| ||||||||||| || | |||| | ||| | Sbjct 633 GRATGCCTTCCTTGTCTTGGATCTTTTGCTTTACATTTTCGATAGAATCAGATGATTCAA 692 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || || || || || ||||| || | ||||| ||||| || ||||| Sbjct 693 CCTCTAAGGTGATGGTTTTGCCAGTAAGAGTCTTGACAAAGATTTGCAT 741 >seq2078 Length=27221 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 |||||| | | ||| || || | || || |||||||||||||| || || || || || Sbjct 1057 ACCTCCACGGAGACGAAGCACCAGATGTAGTGTAGATTCTTTCTGGATGTTGTAGTCTGA 1116 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 |||| | ||| ||||||| |||||| || ||||| || || | ||||| ||||| || Sbjct 1117 TAGAGAGCGACCATCTTCTAATTGTTTGCCGGCAAAAATAAGACGCTGTTGGTCTGGTGG 1176 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || ||||| ||||||||||||||| || || |||||||| | |||| | ||| || Sbjct 1177 AATACCTTCTTTATCTTGAATCTTTTGCTTGACGTTTTCAATAGAATCAGAGGATTCGAC 1236 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||| | || || || |||||||| | ||||| ||||| || ||||| Sbjct 1237 TTCTAGTGTGATTGTTTTGCCTGTGAGTGTCTTCACAAAGATTTGCAT 1284 Score = 138 bits (152), Expect = 2e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||| | ||| || || | || || |||||||||||||| || || || || | Sbjct 1284 TACCACCTCTAAGACGAAGCACCAGATGTAGTGTAGATTCTTTCTGGATGTTGTAGTCTG 1343 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | | || ||||||||||| ||||| || || || | | |||||||||||| | Sbjct 1344 ATAAAGAGCGGCCATCTTCTAGTTGCTTTCCTGCGAAAATCAAACGTTGTTGATCTGGTG 1403 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| |||||||||||| || || |||||||| | |||| | ||| | Sbjct 1404 GAATACCTTCCTTGTCTTGAATCTTTTGCTTAACGTTTTCAATTGAATCAGAGGATTCAA 1463 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| | || || || || || || | ||||| || || || ||||| Sbjct 1464 CTTCAAGGGTAATGGTTTTACCAGTGAGGGTCTTGACGAAAATTTGCAT 1512 >seq1425 Length=32788 Score = 123 bits (136), Expect = 5e-23 Identities = 129/170 (76%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| ||||| ||||| || |||||||| || || || || || || | Sbjct 31181 TACCACCACGAAGACGGAGAACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCRG 31240 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | ||| ||||| | ||| || ||||||||||| || | |||||| ||||| | Sbjct 31241 AAAGAGAACGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGTTGTTGGTCTGGGG 31300 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCA 82751 | || |||||||| |||||||||||| || ||||| ||||| || ||| Sbjct 31301 GAATACCTTCCTTGTCTTGAATCTTTTGCTTGACATTGTCAATGGTGTCA 31350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981791800833946