Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq2232 104 2e-17 >seq2232 Length=20840 Score = 104 bits (114), Expect = 2e-17 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 |||||||| ||||| || ||||| || | | | ||| ||| || | |||||| | Sbjct 545 GTGGACTCCTTCTGGATGTTGTAGTCAGAGA--GAGAACGGCCGTCTTCCAACTGCTTAC 602 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| ||||||| || || ||||| ||||| |||||||||||||| ||||||||||| Sbjct 603 CAGCGAAAATGAGACGTTGTTGGTCTGGAGGRATGCCTTCCTTGTCTTGGATCTTTTGCT 662 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | | || | | || || || | ||||| ||||||||| || |||| Sbjct 663 TTACATTTTCGATAGAATCAGATGATTCAACCTCTAAGGTGATGGTTTTGCCAGTAAGAG 722 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || || ||||| Sbjct 723 TCTTGACAAAGATTTGCAT 741 Score = 89.7 bits (98), Expect = 5e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGC 133589 || || || || ||||| || ||||| ||||||||||| |||||||||||||| | | Sbjct 839 ATAAGACGTTGTTGGTCTGGGGGGATACCTTCCTTGTCTTGGATCTTTTGCTTGACGTTC 898 Query 133590 TCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACG 133649 |||| | ||||| || || || || | |||| ||| || || || || || || ||| Sbjct 899 TCAATGGAGTCGGAGGATTCGACTTCCAAAGTGATGGTCTTACCAGTGAGGGTCTTAACG 958 Query 133650 AAAATCTGCATG 133661 ||||| |||||| Sbjct 959 AAAATTTGCATG 970 Score = 87.8 bits (96), Expect = 2e-12 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGC 133589 || || || || ||||| || || || ||||||||||| |||||||||||||| | | Sbjct 383 ATAAGACGTTGTTGGTCTGGGGGRATACCTTCCTTGTCTTGGATCTTTTGCTTGACGTTC 442 Query 133590 TCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACG 133649 |||| | ||||| || || || || | || | || ||||| || ||||| || || Sbjct 443 TCAATGGAGTCGGAGGATTCGACTTCCAAAGTMATAGTCTTGCCAGTAAGAGTCTTAACR 502 Query 133650 AAAATCTGCAT 133660 ||||||||||| Sbjct 503 AAAATCTGCAT 513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483403795673360