Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq244 178 3e-39 seq2381 102 2e-16 seq2024 96.9 8e-15 seq1825 96.9 8e-15 seq2716 95.1 3e-14 seq2261 93.3 1e-13 >seq244 Length=4003 Score = 178 bits (196), Expect = 3e-39 Identities = 558/855 (65%), Gaps = 11/855 (1%) Strand=Plus/Minus Query 110307 TTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATTGAA 110366 ||||||||||| || || || ||| |||| || || ||||||| || | |||| Sbjct 2902 TTTGGTTTCAAGACACTCGAGCGTTCTTACTTGCTCAAGATCAATGGTAAGGTTGCTGAA 2843 Query 110367 CGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAAGCT 110426 | || ||||| || | | |||||||| ||||||||||||| | ||||| | || Sbjct 2842 AGACCACAACATTTGATCATGCGTGTTGCTGTTGGTATTCATGGCAACGATATCGATGCC 2783 Query 110427 GTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACCCTA 110486 | ||||| || | | | | || | || |||||| | |||||| || Sbjct 2782 GCCATTGAGACATACAACCTTATGTCTGAACGTTACTTTACTCATGCCAGTCCTACTCTT 2723 Query 110487 TTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGA-ATTAACGA 110545 || || || || ||| | | ||| || |||||||||| ||| | | || || || Sbjct 2722 TTCAATGCTGGTACTCCTCGTCCTCAAATGTCTTCTTGCTT-CTTGTTGACTATGAAGGA 2664 Query 110546 TGATTCTATTGAAGGTATTTATGATGCTCTTAAAGA-AACTGCTCTTATTTCTAAAAACT 110604 ||||||||| |||||||| || || | |||||| | ||||| |||||||| | Sbjct 2663 TGATTCTATCGAAGGTATCTACGAAAC-CTTAAAAATTTGTGCTCAAATTTCTAAGACTG 2605 Query 110605 CTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAACAG 110664 |||| || || ||| | |||| || | ||||| | || || | |||| || Sbjct 2604 CTGGTGGTATCGGTTTGAACGTGCACAACATTCGTGCCAATGGCTCTTATATTGCTGGTA 2545 Query 110665 CGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAAT 110724 | || ||| ||| | ||| ||| | || ||||| | ||||||||| | ||||| | Sbjct 2544 CTAACGGTTATTCTAATGGCCTTTTGCCCATGTTGCGTGTCTTCAACAATACTGCTCGTT 2485 Query 110725 ATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGC 110781 |||| |||| |||||| ||| | || | |||||||| || | ||||| |||| Sbjct 2484 ATGTTGATCAGGGTGGTAACAAGCGTCCCGGTGCCTTTGCTATGTACTTGGAACCATGGC 2425 Query 110782 ATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAG 110841 | | ||||| || |||||||| | | || || || || ||| |||| Sbjct 2424 ACCCTGATATTTTCACTTTCTTAGATTTGAGAAAGAACTTTGGTAAAGATGAAATTAGAG 2365 Query 110842 CACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAA 110901 | ||||| || || ||||| | ||| | | ||| | |||||| | ||||| | || | Sbjct 2364 CTCGTGACTTGTTCTATGCTCTTTGGGTACCTGATCTCTTCATGGAGCGTGTACGTGACA 2305 Query 110902 ATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAA 110961 |||| ||||| | | |||||| || ||||||| || | ||| |||| || Sbjct 2304 ATGGTGAATGGTCCTTGTTCTGTCCTAATGAAGCTCCTGGACTTTGTGAAGTATGGGGTG 2245 Query 110962 AAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCA-AGTTTCGCAAACAAATT 111020 | || |||| | | |||||||| |||||||| ||||||| || | |||||| | Sbjct 2244 ATGAATTTGTTGCATTATACGAAAAGTATGAAAAGGAAGGCAGAGCTAGAGAAACAA--T 2187 Query 111021 CCA-GCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTA 111079 | | || ||| || | |||| ||||||||| | ||| |||||| || | ||| | Sbjct 2186 CAAGGCACAAAAATTGTGGTATGCTATCCTTGAAGCTCAAACTGAAACCGGTAATCCATT 2127 Query 111080 TATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAA 111139 || | ||||| ||| ||| | || ||| || || || || || || || Sbjct 2126 CATGCTCTATAAGGATGCCTGTAACAGAAAGAGTAACCAGCAAAACTTGGGTACTATCAA 2067 Query 111140 GTCTAGTAATTTGTG 111154 || |||||| ||||| Sbjct 2066 GTGTAGTAACTTGTG 2052 >seq2381 Length=15399 Score = 102 bits (112), Expect = 2e-16 Identities = 298/455 (65%), Gaps = 28/455 (6%) Strand=Plus/Minus Query 131864 GTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGG 131923 || || |||||| ||| |||||||| ||||| || ||| | || ||||||| ||| Sbjct 11052 GTTGCCTTTGCTGCTGTCGAAGGTATCTTCTTCTCTGGTTCATTTGCCTCTATCTTCTGG 10993 Query 131924 CTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGAT 131983 || ||||||||||| | |||||||| | | || || || || | |||| | ||| Sbjct 10992 CTCAAGAAGCGTGGTCTCATGCCTGGTTTGACTTTCTCTAACGAACTTATCTGTCGTGAT 10933 Query 131984 GAAGCATTGCATACTGAATTTGCTAT----------ATTAATCTATAGAAAATT--TGCT 132031 |||| | || ||||| |||||| | | | || |||| ||| | || Sbjct 10932 GAAGGTCTTCACACTGACTTTGCTTGTCTCTTGTTCACTCACCTCAAGAAGATTCCTTCT 10873 Query 132032 GATAAACTTGATGAAAATAATATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAG 132091 | ||| | || || | || || || | || || |||| ||| || | Sbjct 10872 GCCGAACGT-ATCAAGAGCAT------CA--TTGTT---GAGGCTGTTGGTATTGAACAA 10825 Query 132092 GAGTTTATTACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAATGCTGACTCTATGAAG 132151 || || | || || ||||| ||| ||| |||||||| ||||| ||| | |||| Sbjct 10824 GAATTCTTGACTGATGCTTTACCTGTCAACTTGATTGGTATGAACGCTAAGCTTATGTGC 10765 Query 132152 GAGTACATTGAATTCGTTGCTGATCGTTTAAT--TAACCAACTTGGATATTCCAAGATTT 132209 | |||||||||||||| || |||||||| || | || ||||| | | ||||| | Sbjct 10764 CAATACATTGAATTCGTCGCCGATCGTTTGATGGTTGCC--CTTGGCTTTGATAAGATCT 10707 Query 132210 ATAACACCCAAAACCCCTATACATGGATGGAGTCAATTTCGCTTGAAGGTAAAACGAACT 132269 | || || ||||||| | | ||||| ||||| ||| |||| || || |||| Sbjct 10706 ACAATGCCACTAACCCCTTTGATTTCATGGACATGATTTCTCTTCAAGGCAAGACCAACT 10647 Query 132270 TCTTCGAAAGTCGTGTATCTGAGTACTCTCGTGCT 132304 |||| || | ||||| ||||| ||| |||||| Sbjct 10646 TCTTTGAGAAGCGTGTTTCTGACTACCAACGTGCT 10612 >seq2024 Length=32104 Score = 96.9 bits (106), Expect = 8e-15 Identities = 234/350 (67%), Gaps = 12/350 (3%) Strand=Plus/Plus Query 110761 CTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATC 110820 |||||||||| || ||||||||| ||||||||||||||| | | || | || ||||| | Sbjct 3504 CTATCTATCTTGAGCCTTGGCATCCAGATATATTTGAATACATTGATC-TCTCAAAAAAC 3562 Query 110821 AAGGATTTGAAGAACA---AAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATT 110877 || | ||||||| | | | || ||| | || | | | |||||| | ||| Sbjct 3563 AACG--GTGAAGAAAACTTACGTGCTCGTCACTTGCTCCTCGGCCTTTGGATTCCCAATT 3620 Query 110878 TATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTC 110937 |||| ||||| ||||| | |||||||| |||||| | |||||||| || | || Sbjct 3621 TATTTATGAAGCGTGTGGAGGAAAATGGTGAATGGTCTTTGATGTGTCCCAATGAATGTC 3680 Query 110938 CTGGTCTATCTGA---TGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAA 110994 ||||||| ||| | | ||| ||| ||||||||| |||| || |||| Sbjct 3681 CTGGTCT---TGACAGTTCGTTTGGTCAAGCATTTGAAGACATTTATTTGTCTTACGAAA 3737 Query 110995 AAGAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAAT 111054 ||| || || | ||| | ||||||| | |||||||| |||| | || Sbjct 3738 AAGCTGGTAAAGCCAGAAAAACTGTATCAGCTCAGAAGCTTTGGTTTTCAATCTTGGATG 3797 Query 111055 CACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAAT 111104 | ||| | |||| ||| | |||| ||| | ||||||||| ||| ||| Sbjct 3798 CTCAAATGGAAAGTGGTATGCCTTTTATGTGCTATAAAGATGCTATCAAT 3847 >seq1825 Length=31147 Score = 96.9 bits (106), Expect = 8e-15 Identities = 386/596 (65%), Gaps = 19/596 (3%) Strand=Plus/Minus Query 110307 TTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTG-TCAATGGCGAGATCATTGA 110365 ||||||||||| || | |||||| ||| | |||| | |||| || |||| |||| Sbjct 9862 TTTGGTTTCAAGACATTGGAACGTAGTTACCT-CTTCAAGATCAACGGTAAGATTGTTGA 9804 Query 110366 ACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAAGC 110425 |||||||||| ||||| || | ||||| || ||||||| ||||| || ||| | || Sbjct 9803 ACGTCCTCAATACATGATTATGCGTGTAGCTCTTGGTATCCATGGTCAAGATCTAGAAAG 9744 Query 110426 TGTTATTGAATGTTATGATGT-ATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACCC 110484 || | | || ||| | || | ||| | | | ||||||||| || |||| Sbjct 9743 TGCCTTCAAGACATACGATCTCATGTCCTCCAAATATTTC-ACTCATGCTACACCCACCC 9685 Query 110485 TATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAACG 110544 | || || || || || | ||||| | || || ||| | || || | Sbjct 9684 TCTTCAATGCGGGTACACCTAAGCCTCAATTATCCAGCTGTTTCCTTGTCCAGATGAAAG 9625 Query 110545 ATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTG--CTCTTATTTCTAAAAA 110602 | ||| ||| |||||||| ||||| | ||| || || ||| ||| ||| |||||| Sbjct 9624 AAGATAGTATCGAAGGTATCTATGA--CACTTTAACAACCTGTGCTCGTATCTCTAAAGC 9567 Query 110603 CTCTGGAGGAATTGGTATTCACGTTC---ATGATAT-TCGCTCAAAAGGAGCAAATATCG 110658 |||| || | ||| | | | ||| | ||| | |||| || | | || | Sbjct 9566 TGCTGGTGGTGTCGGTGT-CTCATTCCAAAAGATCCGTGGCTCT---GGTTCTTACATTG 9511 Query 110659 CAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTG 110718 | | || ||| | || | ||| |||| || ||| | | ||||| || ||||| | Sbjct 9510 CTGGTACCAATGGTACATCCAATGGTATTGTGCCTATGCTTCGTGTCTTTAATGACACAG 9451 Query 110719 CAAAATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAAC 110775 | | ||| | |||||||||| ||| | ||||| ||||| || || || |||| Sbjct 9450 CTCGTTTTGTAACTCAAGGTGGTGGTAAGCGTAATGGTAACTTTGCCATGTACCTTGAAC 9391 Query 110776 CTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAAC 110835 |||||||| ||| | ||||| || || ||||| | || |||||||| ||| ||| Sbjct 9390 CTTGGCATATTGATGTCTTTGACTTTTTGGAACTAAGAAAGAATCAAGGTGCTGATGAAG 9331 Query 110836 AAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGT 110891 | | || |||||||| || | | | ||| |||| ||| | || ||| | ||| Sbjct 9330 TACGTGCTCGTGATTTGTTCTTGGGTCTTTGGGTTTCTGATCTCTTTATGGAGCGT 9275 Score = 86.0 bits (94), Expect = 1e-11 Identities = 125/174 (72%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 113256 AAGACTATTTGGGAAATTAAGCAACGTGTCGTAATTGATATGGCTGCAGATCGTGGCAAG 113315 |||||| | |||||||| ||| | | |||||||||||||| |||||||| Sbjct 8006 AAGACTGTCTGGGAAATCTCTCAAAGAACAATTATTGATATGGCTGCTGATCGTGGTGCT 7947 Query 113316 TTTATCGATCAATCTCAGTCGATGAACTTATTTATGCCGGACACCTCACCA-GATAAGGT 113374 ||||| |||||||| || || |||||||| |||| | || |||| | | | |||| | Sbjct 7946 TTTATTGATCAATCCCAATCTATGAACTTGTTTACAGCCGA-ACCTAATTATGGTAAGCT 7888 Query 113375 GACATCTGCTCTATTTTACGGCTGGAAAAAAGGTTTAAAAACAGGTATGTATTA 113428 ||| ||| | || || | ||||| || ||||| || ||||| |||||||| Sbjct 7887 GACCTCTATGCATTTCTATGCATGGAAGAAGGGTTTGAAGACAGGCATGTATTA 7834 >seq2716 Length=47934 Score = 95.1 bits (104), Expect = 3e-14 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 |||||| ||| |||||| || |||||||| | ||||| || || || | ||||||| Sbjct 42562 CATTTGTCTGATAATGATGTTGTCCTGTTCAACCGTCAACCTTCCCTTCACAGAATGTCT 42621 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCT 305428 || |||||||| | || || | || | ||||| || || || | ||| Sbjct 42622 ATCATGGCTCACTTTGCTAAGGTTATGCCTTGGAGAACATTCCGTTTCAACGAGTGTGTC 42681 Query 305429 TGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 ||| | |||||||| || ||||||||||| ||||| ||||| |||||| | |||||| Sbjct 42682 TGTTCACCTTATAACGCTGATTTTGATGGTGATGAGATGAACATGCATTTGCCTCAA 42738 >seq2261 Length=59247 Score = 93.3 bits (102), Expect = 1e-13 Identities = 90/113 (80%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 167239 TCATTACACCACCAGCATTATCGAATTCATTCGCA-TAATTTGGTGCTGAAAATACAGTA 167297 |||| | | |||||||||||||||||||| | || ||||| ||||||||||| | || Sbjct 10515 TCATCATAGCACCAGCATTATCGAATTCAC-CACAGTAATTGGGTGCTGAAAAGATTGTG 10457 Query 167298 ACTAATTTACGATTGAAAAATAATTCATAACCATCTTCAACAACTTCATGGGC 167350 || | || ||| || | || |||||||||||||| |||||||||| ||| || Sbjct 10456 ACGAGTTGACGCTTTGAGAAGAATTCATAACCATCCTCAACAACTTGATGTGC 10404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186770010206254