Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq2232 116 9e-21 seq2078 111 4e-19 seq1425 100 7e-16 >seq2232 Length=20840 Score = 116 bits (128), Expect = 9e-21 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| ||| || || || || ||||| ||||| || || || ||| ||||| Sbjct 738 CAAATCTTTGTCAAGACTCTTACTGGCAAAACCATCACCTTAGAGGTTGAATCATCTGAT 679 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | ||||| |||||||||||||| ||||| || ||||| || || ||| ||| Sbjct 678 TCTATCGAAAATGTAAAGCAAAAGATCCAAGACAAGGAAGGCATYCCTCCAGACCAACAA 619 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || ||||| || |||||||||||||| || | || | | || |||||| || Sbjct 618 CGTCTCATTTTCGCTGGTAAGCAGTTGGAAGACGGCCGTTCTCTCTCTGACTACAACATC 559 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||| ||||| ||||||||| Sbjct 558 CAGAAGGAGTCCACTCTTCAC 538 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || |||||||||||||| ||| || ||| | | || Sbjct 954 AAGACCCTCACTGGTAAGACCATCACTTTGGAAGTCGAATCCTCCGACTCCATTGAGAAC 895 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||||||||| ||||| || ||||| || || ||| ||| | |||||||| Sbjct 894 GTCAAGCAAAAGATCCAAGACAAGGAAGGTATCCCCCCAGACCAACAACGTCTTATCTTT 835 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || || || |||||||| | || | | || ||||| |||| ||||| ||| Sbjct 834 GCTGGTAAACAATTAGAAGATGGCCGTTCTCTTTCTGACTACAATATCCAAAAAGAATCT 775 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || |||||| | ||| | | ||||| Sbjct 774 ACCCTTCACTTGGTTCTTCGTCTTCG 749 Score = 95.1 bits (104), Expect = 3e-14 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || || || || || || || || || ||||||||||| ||| || ||| Sbjct 510 CAGATTTTYGTTAAGACTCTTACTGGCAAGACTATKACTTTGGAAGTCGAATCCTCCGAC 451 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | | || || ||||||||||| ||||| || ||||| || || ||| ||| Sbjct 450 TCCATTGAGAACGTCAAGCAAAAGATCCAAGACAAGGAAGGTATYCCCCCAGACCAACAA 391 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | |||||||| || || || || || |||||||| | || | | || ||||| || Sbjct 390 CGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGCCGTTCTCTTTCTGACTACAATATC 331 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || ||||| ||||| |||||| | ||| | | ||||| Sbjct 330 CAAAAAGAATCTACCCTTCACTTGGTTCTTCGTCTTCG 293 >seq2078 Length=27221 Score = 111 bits (122), Expect = 4e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || |||||||| ||||| ||||| | ||||| ||| ||||| | | ||| Sbjct 1269 AAGACACTCACAGGCAAAACAATCACACTAGAAGTCGAATCCTCTGATTCTATTGAAAAC 1210 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||||||||||||||| |||||||| ||| || ||| || | ||||| || Sbjct 1209 GTCAAGCAAAAGATTCAAGATAAAGAAGGTATTCCACCAGACCAACAGCGTCTTATTTTT 1150 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| || || || |||||||| | || | | || |||||| |||||||||| ||| Sbjct 1149 GCCGGCAAACAATTAGAAGATGGTCGCTCTCTATCAGACTACAACATCCAGAAAGAATCT 1090 Query 206365 ACTCTTCACCTTGT 206378 || || || || || Sbjct 1089 ACACTACATCTGGT 1076 Score = 104 bits (114), Expect = 6e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || ||||| || ||||| || || | ||||| ||| ||||| || | ||| Sbjct 1498 CAAGACCCTCACTGGTAAAACCATTACCCTTGAAGTTGAATCCTCTGATTCAATTGAAAA 1439 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||||||||||||||| || ||||| ||| || || ||| | | || || Sbjct 1438 CGTTAAGCAAAAGATTCAAGACAAGGAAGGTATTCCACCAGATCAACAACGTTTGATTTT 1379 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| |||||||| | |||||||| | |||| | || |||||| |||||||||| || Sbjct 1378 CGCAGGAAAGCAACTAGAAGATGGCCGCTCTTTATCAGACTACAACATCCAGAAAGAATC 1319 Query 206364 TACTCTTCACCTTGT 206378 ||| || || || || Sbjct 1318 TACACTACATCTGGT 1304 >seq1425 Length=32788 Score = 100 bits (110), Expect = 7e-16 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 || |||||||| | || || ||||||||||||||||| || ||||| ||| || Sbjct 31355 AGCTCTGACACCATTGACAATGTCAAGCAAAAGATTCAAGACAAGGAAGGTATTCCCCCA 31296 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343 ||| ||| | |||||||| || || ||||| ||||||||||| | || | | || Sbjct 31295 GACCAACAACGTCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCGTTCTCTTTCYGAC 31236 Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||| |||| || || ||||| |||||| | ||| | | ||||| Sbjct 31235 TACAACATCCAAAAGGAATCTACCCTTCACTTGGTTCTCCGTCTTCG 31189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181778190189694