Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq244 105 6e-18 seq2078 91.5 1e-13 seq2232 86.0 6e-12 >seq244 Length=4003 Score = 105 bits (116), Expect = 6e-18 Identities = 180/261 (69%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 148146 CAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGC 148205 ||| || || ||| ||||||| ||| | || || || |||||| || ||||| || Sbjct 2678 CAAGAAGCAAGAAGACATTTGAGGACGAGGAGTACCAGCATTGAAAAGAGTAGGACTGGC 2737 Query 148206 GTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTC 148265 || ||||| | || | ||| | | || |||||||| ||| | ||||| |||| Sbjct 2738 ATGAGTAAAGTAACGTTCAGACATAAGGTTGTATGTCTCAATGGCGGCATCGATATCGTT 2797 Query 148266 GCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTTCGGCAACTTGATT 148325 ||| ||||| || | || || ||||||| || || ||||||| ||| ||||| | | Sbjct 2798 GCCATGAATACCAACAGCAACACGCATGATCAAATGTTGTGGTCTTTCAGCAACCTTACC 2857 Query 148326 GTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACCAAAGTACTTGTAATCAAA 148385 ||||||||||| | || | ||||| || ||| |||||||| | ||||| | || Sbjct 2858 ATTGATCTTGAGCAAGTAAGAACGCTCGAGTGTCTTGAAACCAAAGAAATTGTATTTGAA 2917 Query 148386 ATCTAGCTCGTAAGCGATGGC 148406 ||| | || || |||||| Sbjct 2918 ATCACGATCATAGATGATGGC 2938 >seq2078 Length=27221 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGA--ATCTT 131972 |||| ||||| | || ||||| || ||||||||||| | || | |||| ||||| Sbjct 1076 ACCAGATGTAGTGTAGATTCTTTCTGGATGTTGTAGTC--TGATAGAGAGCGACCATCTT 1133 Query 131973 CGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGG 132032 | | ||||| |||| | | || ||||||||||| ||||| || || ||||||||||| Sbjct 1134 CTAATTGTTTGCCGGCAAAAATAAGACGCTGTTGGTCTGGTGGAATACCTTCTTTATCTT 1193 Query 132033 TAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTT 132092 ||| ||||| || | | ||| | || ||| | | || ||||| | || | |||| Sbjct 1194 GAATCTTTTGCTTGACGTTTTCAATAGAATCAGAGGATTCGACTTCTAGTGTGATTGTTT 1253 Query 132093 TACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || || || || || | || || ||||| Sbjct 1254 TGCCTGTGAGTGTCTTCACAAAGATTTGCAT 1284 >seq2232 Length=20840 Score = 86.0 bits (94), Expect = 6e-12 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 |||||| || | | | || |||||||| || |||||||| | | ||| |||||| Sbjct 304 AACCAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCAGAAAGAGAACGGCCATCTTC 363 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 | |||||||| | | |||| ||||| ||||| ||||| || || ||||| || || Sbjct 364 TAATTGTTTACCAGCAAAGATAAGACGTTGTTGGTCTGGGGGRATACCTTCCTTGTCTTG 423 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 || ||||| || | | || | | |||| | || ||||| | || | || || Sbjct 424 GATCTTTTGCTTGACGTTCTCAATGGAGTCGGAGGATTCGACTTCCAAAGTMATAGTCTT 483 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| ||||| || | ||||||||||| Sbjct 484 GCCAGTAAGAGTCTTAACRAAAATCTGCAT 513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476594435201040