Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq2078 107 2e-18 seq2232 98.7 8e-16 >seq2078 Length=27221 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| ||||| || ||| | || ||||| || || || | ||| ||| || Sbjct 1284 ATGCAAATCTTTGTGAAGACACTCACAGGCAAAACAATCACACTAGAAGTCGAATCCTCT 1225 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 |||||| ||| | || || ||||| ||| || |||||||| | || || ||| Sbjct 1224 GATTCTATTGAAAACGTCAAGCAAAAGATTCAAGATAAAGAAGGTATTCCACCAGACCAA 1165 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || | ||||||| ||| |||||||||||||||||| | || | || |||||| Sbjct 1164 CAGCGTCTTATTTTTGCCGGCAAACAATTAGAAGATGGTCGCTCTCTATCAGACTACAAC 1105 Query 106440 ATACAAAAAGAATCTACACTACAT 106463 || || |||||||||||||||||| Sbjct 1104 ATCCAGAAAGAATCTACACTACAT 1081 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 106253 TTTAAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGA 106312 |||||| ||||||||||| || || || | ||||| || ||||||||| | ||| || Sbjct 1519 TTTAAATATGCAAATTTTCGTCAAGACCCTCACTGGTAAAACCATTACCCTTGAAGTTGA 1460 Query 106313 ACCCGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGT 106372 | || ||||| ||| | || || ||||| ||| ||||| ||||| | || Sbjct 1459 ATCCTCTGATTCAATTGAAAACGTTAAGCAAAAGATTCAAGACAAGGAAGGTATTCCACC 1400 Query 106373 TGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGA 106432 ||||||||| | | |||| || || || ||| |||||||| || | || Sbjct 1399 AGATCAACAACGTTTGATTTTCGCAGGAAAGCAACTAGAAGATGGCCGCTCTTTATCAGA 1340 Query 106433 TTACAACATACAAAAAGAATCTACACTACAT 106463 |||||||| || |||||||||||||||||| Sbjct 1339 CTACAACATCCAGAAAGAATCTACACTACAT 1309 >seq2232 Length=20840 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 106257 AAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCC 106316 || ||||||||||| ||||| || | ||||| |||||||| || ||||| ||| || Sbjct 972 AACATGCAAATTTTCGTTAAGACCCTCACTGGTAAGACCATCACTTTGGAAGTCGAATCC 913 Query 106317 GGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGAT 106376 ||| || ||| | || || ||||| || ||||| ||||| | ||| || Sbjct 912 TCCGACTCCATTGAGAACGTCAAGCAAAAGATCCAAGACAAGGAAGGTATCCCCCCAGAC 853 Query 106377 CAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTAC 106436 |||||| | ||||| | ||| || ||||||||||||||| || | || ||| Sbjct 852 CAACAACGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGCCGTTCTCTTTCTGACTAC 793 Query 106437 AACATACAAAAAGAATCTACACTACATTTAGT 106468 || || |||||||||||||| || || || || Sbjct 792 AATATCCAAAAAGAATCTACCCTTCACTTGGT 761 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| ||||| ||||| || | ||||||||||| || || ||||| ||| || | Sbjct 513 ATGCAGATTTTYGTTAAGACTCTTACTGGCAAGACTATKACTTTGGAAGTCGAATCCTCC 454 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || || ||| | || || ||||| || ||||| ||||| | ||| || ||| Sbjct 453 GACTCCATTGAGAACGTCAAGCAAAAGATCCAAGACAAGGAAGGTATYCCCCCAGACCAA 394 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | ||||| | ||| || ||||||||||||||| || | || ||||| Sbjct 393 CAACGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGCCGTTCTCTTTCTGACTACAAT 334 Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468 || |||||||||||||| || || || || Sbjct 333 ATCCAAAAAGAATCTACCCTTCACTTGGT 305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402315801854912