Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq2048 122 1e-21 seq1585 116 5e-20 >seq2048 Length=28636 Score = 122 bits (134), Expect = 1e-21 Identities = 174/244 (71%), Gaps = 6/244 (2%) Strand=Plus/Plus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 ||||| || | ||||||||||| | ||||| || |||||| |||| | ||| Sbjct 1308 TACTCTTCTTACATCTACAAGGTCTTGAAGCAAGTTCACCCCGATACCGGT-----ATC- 1361 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||||||||| ||||||| ||| ||||||| ||||||||||| || | || || || | | Sbjct 1362 TCCAACAAGGCCATGTCCATCTTGAACTCCTTTGTCAACGATATCTTTGAACGTATTGCC 1421 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 | || ||| |||| || ||||||||| ||| ||| | || || ||| Sbjct 1422 TCTGAAGCCTCCAAGTTGGCTGCCTACAACAAGCGTTCCACCATCTCTTCTCGTGAAATC 1481 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 ||||| || || || || ||| | | || ||||| |||| |||||||||||| || ||| Sbjct 1482 CAGACTGCTGTCCGTCTCATCCTCCCTGGTGAACTTGCCAAGCACGCCGTCTCTGAAGGC 1541 Query 725139 ACCA 725142 |||| Sbjct 1542 ACCA 1545 >seq1585 Length=1238 Score = 116 bits (128), Expect = 5e-20 Identities = 173/244 (71%), Gaps = 6/244 (2%) Strand=Plus/Minus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 ||||| || | ||||||||||| | ||||| || |||||| |||| | ||| Sbjct 382 TACTCTTCTTACATCTACAAGGTCTTGAAGCAAGTTCACCCCGATACCGGT-----ATC- 329 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||||||||| ||||||| ||| ||||||| ||||||||||| || | || || || | | Sbjct 328 TCCAACAAGGCCATGTCCATCTTGAACTCCTTTGTCAACGATATCTTTGAACGTATTGCC 269 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 | || ||| |||| || ||||||||| ||| ||| | || || ||| Sbjct 268 TCTGAAGCCTCCAAGTTGGCTGCCTACAACAAGCGTTCCACCATCTCTTCTCGTGAAATC 209 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 ||||| || || || || ||| | | || ||||| |||| |||||||||||| || || Sbjct 208 CAGACTGCTGTCCGTCTCATCCTCCCTGGTGAACTTGCCAAGCACGCCGTCTCTGAAGGT 149 Query 725139 ACCA 725142 |||| Sbjct 148 ACCA 145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177539784527868