Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq2078 136 4e-27 seq2232 104 2e-17 seq1825 86.0 6e-12 >seq2078 Length=27221 Score = 136 bits (150), Expect = 4e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| || || | ||| || ||||| || ||||| || || ||||||||||| Sbjct 1286 CCACCTCTAAGACGAAGCACCAGATGTAGTGTAGATTCTTTCTGGATGTTGTAGTCTGAT 1345 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | | | | || || || || || ||||| ||||||||||| || ||||| || || Sbjct 1346 AAAGAGCGGCCATCTTCTAGTTGCTTTCCTGCGAAAATCAAACGTTGTTGATCTGGTGGA 1405 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || |||||||| ||||| || || || | || || || ||||| || Sbjct 1406 ATACCTTCCTTGTCTTGAATCTTTTGCTTAACGTTTTCAATTGAATCAGAGGATTCAACT 1465 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || || |||||||||||||| || | || || |||||||||||||| || Sbjct 1466 TCAAGGGTAATGGTTTTACCAGTGAGGGTCTTGACGAAAATTTGCATATT 1515 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | ||| || | ||| || ||||| || ||||| || || ||||||||||| Sbjct 1058 CCTCCACGGAGACGAAGCACCAGATGTAGTGTAGATTCTTTCTGGATGTTGTAGTCTGAT 1117 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | | | || || || | |||||||| |||||||| | |||||| || || || || Sbjct 1118 AGAGAGCGACCATCTTCTAATTGTTTGCCGGCAAAAATAAGACGCTGTTGGTCTGGTGGA 1177 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAAT-GTGTCGGACGATTCCAC 134665 || |||||||| |||||||| ||||| |||| || | |||| | || || ||||| || Sbjct 1178 ATACCTTCTTTATCTTGAATCTTTTGCTTGA-CGTTTTCAATAGAATCAGAGGATTCGAC 1236 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || ||||| || || | || || || || |||||||| Sbjct 1237 TTCTAGTGTGATTGTTTTGCCTGTGAGTGTCTTCACAAAGATTTGCAT 1284 >seq2232 Length=20840 Score = 104 bits (114), Expect = 2e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || || ||||| ||||| || |||||||| || | | || || | || Sbjct 766 GTGAAGGGTAGATTCTTTTTGGATATTGTAGTCAGAAAGAGAACGGCCATCTTCTAATTG 825 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||| || ||||| || | ||| || || || || || || ||||| || ||||| || || Sbjct 826 TTTACCAGCAAAGATAAGACGTTGTTGGTCTGGGGGGATACCTTCCTTGTCTTGGATCTT 885 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||| ||||| || | | |||||| ||||| || || | ||| ||||| ||||| || Sbjct 886 TTGCTTGACGTTCTCAATGGAGTCGGAGGATTCGACTTCCAAAGTGATGGTCTTACCAGT 945 Query 134690 TAAAGTTTTAACGAAAATTTGCATTTT 134716 | || ||||||||||||||||| || Sbjct 946 GAGGGTCTTAACGAAAATTTGCATGTT 972 Score = 93.3 bits (102), Expect = 4e-14 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || || ||||| ||||| || |||||||| || | | || || | || Sbjct 310 GTGAAGGGTAGATTCTTTTTGGATATTGTAGTCAGAAAGAGAACGGCCATCTTCTAATTG 369 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||| || ||||| || | ||| || || || || || || ||||| || ||||| || || Sbjct 370 TTTACCAGCAAAGATAAGACGTTGTTGGTCTGGGGGRATACCTTCCTTGTCTTGGATCTT 429 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||| ||||| || | | |||||| ||||| || || | ||| || || || || || Sbjct 430 TTGCTTGACGTTCTCAATGGAGTCGGAGGATTCGACTTCCAAAGTMATAGTCTTGCCAGT 489 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 | ||| ||||| ||||| ||||| Sbjct 490 AAGAGTCTTAACRAAAATCTGCAT 513 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || ||||| ||||| || ||||||||||| | | | ||| || | ||| Sbjct 538 GTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGAACGGCCGTCTTCCAACTG 597 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 || || || ||||| | ||| || || || || || |||||||| || ||||| || || Sbjct 598 CTTACCAGCGAAAATGAGACGTTGTTGGTCTGGAGGRATGCCTTCCTTGTCTTGGATCTT 657 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||| || || || | | || || ||||| || || | || |||||||| || || Sbjct 658 TTGCTTTACATTTTCGATAGAATCAGATGATTCAACCTCTAAGGTGATGGTTTTGCCAGT 717 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 | ||| || || || |||||||| Sbjct 718 AAGAGTCTTGACAAAGATTTGCAT 741 >seq1825 Length=31147 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 9097 CTGTATAAAACCGTTTGGGAAATGAAGCAAAGCACGCTGATCGGCATGGCTGCGGATAGA 9156 || || || || || |||||||| ||||| || | || | |||||||| ||| | Sbjct 8012 CTCTACAAGACTGTCTGGGAAATCTCTCAAAGAACAATTATTGATATGGCTGCTGATCGT 7953 Query 9157 GGCGCTTTTATTGATCAGAGTCAATCTTTTAACGTGTTCGTAGCCGCACCAACTTACGCT 9216 || |||||||||||||| |||||| | ||| |||| ||||| ||| | ||| | | Sbjct 7952 GGTGCTTTTATTGATCAATCCCAATCTATGAACTTGTTTACAGCCGAACCTAATTATGGT 7893 Query 9217 TTGATGTCCAGCATTCATTATTTAACTTGGAAAATGGGTTTAAAAACAGGCATGTACTAT 9276 | || || || |||| | | ||||| | |||||| || ||||||||||| || Sbjct 7892 AAGCTGACCTCTATGCATTTCTATGCATGGAAGAAGGGTTTGAAGACAGGCATGTATTAC 7833 Query 9277 TTGCGCACAAAACCCGC 9293 | | |||| |||||| Sbjct 7832 CTTAGAACAAGACCCGC 7816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505380622611280