Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq2120 167 3e-36 seq2204 134 2e-26 >seq2120 Length=25072 Score = 167 bits (184), Expect = 3e-36 Identities = 395/592 (67%), Gaps = 6/592 (1%) Strand=Plus/Plus Query 161107 CCTCCACTACGGGGATTTGACTGACTC--CCTGAACATAGTCTCTATCATTAAGGAAGTA 161164 ||| ||| | || |||||||||||||| |||| | ||| ||||| |||| Sbjct 11107 CCTTCACCATGGTGATTTGACTGACTCTACCTGTC--TTGTCCACATCATCTCTCAAGTT 11164 Query 161165 GAACCTGATGAGATCTACAACCTAGGGGCACAGAGTCATGTGAAAGTATCTTTCGAGGAA 161224 |||| ||| | |||||| | | || || ||| || || || |||||||| Sbjct 11165 CAACCCACTGAAGTATACAACTTGGCTGCTCAATCTCACGTCAAGGTTTCTTTCGATATG 11224 Query 161225 CCTGAATATACAGCACAGACTGATGCTCTGGGAACCCTAAGAGTATTGGAGGCAGTTCGT 161284 ||||||| || | | |||||| || || || || | | ||||| || | ||| Sbjct 11225 TCTGAATACACTGGTGATGTTGATGCCCTTGGTACTCTTCGTCTCTTGGATGCCATCCGT 11284 Query 161285 -CTCCTAGGTATGACAGATAGGGTCCGTATCTACCAGGCATCCACCAGTGAGTTGTATGG 161343 || | ||| | | || | || ||| ||||||| || || ||| ||| | || || Sbjct 11285 ACTTGT-GGTCTTGCTGACCGTGTTCGTTTCTACCAAGCTTCTACCTCTGAACTCTACGG 11343 Query 161344 GTTGGTACAAGAGACACCACAGAAAGAAACAACACCTTTCTACCCACGATCTCCATATGG 161403 ||| || || || || || ||||| ||||| || ||||| || ||||| ||||| Sbjct 11344 TAAGGTTGTCGAAACCCCTCAAAAGGAAACCACACCATTTTACCCTCGTTCTCCCTATGG 11403 Query 161404 CGTAGCTAAACTCTATGGATATTGGATTGTAAAGAACTACAGAGAGAGTTATGGGATGCA 161463 || || || |||||||| || ||||||||| |||||| | || |||| ||| | Sbjct 11404 TGTTGCCAAGCTCTATGGTTACTGGATTGTAGTCAACTACCGTGAATCCTATGACATGTA 11463 Query 161464 CGCCAGTAGTGGTATTCTATTCAACCATGAGTCACCACGACGGGGTGAGACTTTCGTAAC 161523 ||| ||| ||||| || |||||||| || || || || || ||| |||||||| || Sbjct 11464 TGCCTGTAACGGTATCCTCTTCAACCACGAATCTCCTCGTCGTGGTCGTACTTTCGTCAC 11523 Query 161524 CCGTAAGATTACTAGGGGACTATCCCGTATTAGTACAGGACTACAGGATTGTCTATACCT 161583 |||||||||||| | | | | |||| | || | || || ||||| ||||| Sbjct 11524 ACGTAAGATTACTCGTGCTGTTGCTGATATTCATTTGGGTCGTCAAGACTGTCTCTACCT 11583 Query 161584 AGGTAATCTAAACTCAAGACGAGATTGGGGTCATGCTGAAGACTATGTGGAGGCTATGTG 161643 ||||| | | | | || |||||||||||||| || ||||| || | |||||| Sbjct 11584 TGGTAACATTGATGCCAAGCGTGATTGGGGTCATGCCCGTGATTATGTTGAAGGTATGTG 11643 Query 161644 GTTGATGTTACAACAGGAAACTCCTGATGACTATGTGATTGCCACAGGTAAA 161695 | | ||| | ||||| || | ||| | |||| ||| | || || ||| || Sbjct 11644 GCTCATGCTTCAACAAGACAAGCCTCAAGACTTTGTCTTGGCTACTGGTGAA 11695 >seq2204 Length=21180 Score = 134 bits (148), Expect = 2e-26 Identities = 341/519 (66%), Gaps = 0/519 (0%) Strand=Plus/Plus Query 161173 TGAGATCTACAACCTAGGGGCACAGAGTCATGTGAAAGTATCTTTCGAGGAACCTGAATA 161232 ||| ||||||||| | | || || |||||| || ||||| || || |||| || Sbjct 6172 TGAAATCTACAACTTGGCAGCTCAATCTCATGTCAAGGTATCATTTGATATGTCTGAGTA 6231 Query 161233 TACAGCACAGACTGATGCTCTGGGAACCCTAAGAGTATTGGAGGCAGTTCGTCTCCTAGG 161292 ||||| | |||||| || || || || | | || || || |||||| || Sbjct 6232 TACAGGTGATGTTGATGCACTCGGTACACTCCGTCTGTTAGATGCTGTTCGTACTTGCGG 6291 Query 161293 TATGACAGATAGGGTCCGTATCTACCAGGCATCCACCAGTGAGTTGTATGGGTTGGTACA 161352 | | ||| | || || |||| || || || || ||| ||||| || ||| Sbjct 6292 CCTCTCCGATCGTGTTCGCTTCTATCAAGCTTCTACTTCTGAATTGTACGGAAAGGTTGT 6351 Query 161353 AGAGACACCACAGAAAGAAACAACACCTTTCTACCCACGATCTCCATATGGCGTAGCTAA 161412 || || || || || ||||| || ||||||||||| || || || ||||| || || || Sbjct 6352 CGAAACGCCTCAAAAGGAAACCACGCCTTTCTACCCTCGTTCACCCTATGGTGTTGCAAA 6411 Query 161413 ACTCTATGGATATTGGATTGTAAAGAACTACAGAGAGAGTTATGGGATGCACGCCAGTAG 161472 || ||||| |||||||| || || ||| | || ||||| |||| | | | | Sbjct 6412 GCTTTATGGCTATTGGATCGTTGTCAATTACCGTGAATCTTATGAGATGTATACATGCAA 6471 Query 161473 TGGTATTCTATTCAACCATGAGTCACCACGACGGGGTGAGACTTTCGTAACCCGTAAGAT 161532 ||| ||||| || || ||||| || || || || || || || || || |||||||| Sbjct 6472 TGGCATTCTCTTTAATCATGAATCTCCTCGTCGTGGCCGTACCTTTGTCACACGTAAGAT 6531 Query 161533 TACTAGGGGACTATCCCGTATTAGTACAGGACTACAGGATTGTCTATACCTAGGTAATCT 161592 ||| | | | | |||| | |||| || || ||| | || | || ||| | Sbjct 6532 TACAAATGCTGTTGCTGATATTCATTTGGGACGTCAAGAATGTTTGTATTTGGGCAATAT 6591 Query 161593 AAACTCAAGACGAGATTGGGGTCATGCTGAAGACTATGTGGAGGCTATGTGGTTGATGTT 161652 || | | || ||||||||||||||| ||| ||| | || | |||||| | ||| | Sbjct 6592 TGACGCCAAGCGTGATTGGGGTCATGCTCGAGATTATATCGAAGGAATGTGGCTTATGCT 6651 Query 161653 ACAACAGGAAACTCCTGATGACTATGTGATTGCCACAGG 161691 ||||| || | ||||| |||| ||| | ||||| || Sbjct 6652 TCAACAAGAGAAGCCTGACGACTTTGTCTTAGCCACGGG 6690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729903924726320