Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq244 457 1e-123 seq2381 257 2e-63 seq1825 95.1 2e-14 seq2024 87.8 2e-12 >seq244 Length=4003 Score = 457 bits (506), Expect = 1e-123 Identities = 1198/1811 (66%), Gaps = 34/1811 (2%) Strand=Plus/Plus Query 68404 GTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTT 68463 ||||| | ||||||||||||||| || ||||| ||| || ||||| ||||||||| Sbjct 1116 GTACGCAAATAGTACATACCGGTCTTGAGACCCTTTTGCCAACCATAGAAGTGCATACTT 1175 Query 68464 GTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTTTGATCGATG 68523 || | ||| | | | || || || || ||||||| |||||||||||| ||| Sbjct 1176 GTCAATTTACCAAAGTTAGGTTCAGCAATGAAGATATTCAAACTTTGACTTTGATCAATG 1235 Query 68524 AAAGCTCCTCTATCTGCCGCCATTTTTATAA---TACTCTTTTGAGGAATTTCCCAAATA 68580 |||| || | ||| || ||||| | | | ||| || || | |||||| | Sbjct 1236 TAAGCACCACGATCAGCAGCCATATCAACCAATGTACGCT---GACTCAATTCCCAGACT 1292 Query 68581 GTCTTAAAAATCTGTTTGATATCATCTGGAAGGCTCGTA---TTTTGAATGGATCCACCA 68637 || || | || | || | | | |||| | | | ||||| | || |||||| Sbjct 1293 GTTTTGTAGATGTCCTTCAACTTTTGAGGAATACCTGGAATGTTTTGCACTGAACCACCA 1352 Query 68638 TCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTA 68697 || || || || || ||||||| ||||| |||||||| | || ||| | | Sbjct 1353 TCAGACATGATCATGTTCTTGACATCATCGTTCCACAAACCCATTTCAACCAAATCCTTC 1412 Query 68698 AGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTA 68757 | ||| || || || ||||| ||||| |||| | || | |||||| || | || Sbjct 1413 AAGAGCCATGGGTTGACAATTTGGAATTCGCCAGCAAGAACACGACGAGTATAGAGGTTG 1472 Query 68758 CTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGC 68817 ||| || ||||| | | ||||||| |||| ||||||| || || ||||||||| Sbjct 1473 GAGGTGTAAGGTTCGAAACATTCATTGAAACCCAAGATTTGAGAGGTAGAAGCAGTTGGC 1532 Query 68818 ATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGT 68877 ||||| || ||||| | || | || ||||||| ||||| || || || | Sbjct 1533 ATAGGAGCAACCAAGAGTGAGTTACGAACACCATGTTGAGCAATTTTTTCCTTGAGCTTA 1592 Query 68878 TTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTA 68937 ||||||||| || |||| || |||||||| | ||| ||||| | | || Sbjct 1593 ACCCAATCCCAGAGGTCAGTGGGAGTGACATTCCACATATCATATTGCAATACACC---- 1648 Query 68938 CTTG--CATATGAT--CCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACA 68993 |||| || | || || ||| |||||||| || | | |||||| || || || Sbjct 1649 CTTGGACACAGGACTGCCGGGATAGGTTTCATAGTAACCCTTTTCTTCAGCCAGCTCGCA 1708 Query 68994 ACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGC 69053 | || ||||| ||| ||| ||| |||||||| ||||| | ||||||| | | || Sbjct 1709 AGAAGCTTCTAAAGCAGCGTGATAGATTGTTTCAAAAATTTGAATATTGAGTTGCTTAGC 1768 Query 69054 TTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCC 69113 ||| || |||||| | | | | | | ||||||| ||||| | || ||||| || Sbjct 1769 TTCAGGAGAATCGAAAGCAAACTTCATTAACATAAATGTGTCTGCGAGACCTTGAACACC 1828 Query 69114 AATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATT 69173 | ||||||||| | || | ||| ||||| | ||||||||| | ||||||||| || Sbjct 1829 TAGACCGATAGGGCGGTGACGCTTGTTTGAGCGTTCAGCTTCAATGACAGGATAATAGTT 1888 Query 69174 AATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAG 69233 ||||| || || ||||| | |||| | ||||||||| || || | | || | Sbjct 1889 GATATCGATGATCTTATTCAAGTTTCTAGTGATTACTTTAACGACATCATGCAACTTCTG 1948 Query 69234 AAAATCAAATCGTCCA---TCTATAACAAACATATTCAGTGCTACAGATGCTAGATTACA 69290 || || | | | || | | |||||| | || || | || || | ||||| Sbjct 1949 GAAGTCGTAACTTTCACGGTTGACAACAAAGGTGGGCAAAGCAATGGAAGCCAAGTTACA 2008 Query 69291 AACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTT 69350 || || || |||| || | | |||| | || |||||||| | |||||||| || Sbjct 2009 GACAGCAACTTCATCAGGGCTAGAGTATTCAACAATTTCTGTACACAAGTTACTACACTT 2068 Query 69351 GATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAA 69410 |||||| |||| |||||||| ||||||||| |||||||||| ||||| || || || || Sbjct 2069 GATAGTACCCAAGTTTTGCTGGTTACTCTTTCTGTTACAGGCATCCTTATAGAGCATGAA 2128 Query 69411 CGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTAT 69470 ||| |||| |||||| | |||| ||| | |||| | ||| | || || || Sbjct 2129 TGGATTACCGGTTTCAGTTTGAGCTTCAAGGATAGCATACCACAATTTTTGTGCCTTGAT 2188 Query 69471 TACGGTCTTGTAACGCTTC--TCTTTTTCATATTGT--GTATATAGCCGTTCGAATTCAT 69526 | | | | || | || | || |||||||| | | ||||| || | ||||||| Sbjct 2189 T--GTTTCTCTAGCTCTGCCTTCCTTTTCATACTTTTCGTATAATGCAA--CAAATTCAT 2244 Query 69527 CTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCAT 69586 | ||||| || ||| | ||||||| |||||| ||||| | ||| ||||| || ||| Sbjct 2245 CACCCCATACTTCACAAAGTCCAGGAGCTTCATTAGGACAGAACAAGGACCATTCACCAT 2304 Query 69587 CATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATA-AAGAGATCTCTG 69645 || || || | ||| || ||||| || | ||||||||| ||| || | || | Sbjct 2305 TGTCACGTACACGCTCCATGAAGAGATCAGGTACCCAAAGAGC-ATAGAACAAGTCACGA 2363 Query 69646 GTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGA-GAAACTCCATAATATCAGA 69704 | |||| |||| || || || || ||| | | ||| | |||| | | |||||||| Sbjct 2364 GCTCTAATTTCATCTTTACCAAAGTTCTTTCTCAAATCTAAGAAAGTGAA-AATATCAGG 2422 Query 69705 ATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTAT 69764 ||||||||||| | || || || | | | || || || || || || |||||||| | Sbjct 2423 GTGCCATGGTTCCAAGTACATAGCAAAGGCACCGGGACGCTTGTTACCACCCTGATCAAC 2482 Query 69765 GTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATT 69824 || | ||||| || || |||| | || ||| || | || |||||||| | ||| || Sbjct 2483 ATAACGAGCAGTATTGTTGAAGACACGCAACATGGGCAAAAGGCCATTAGAATAACCGTT 2542 Query 69825 TGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCC 69884 || |||| ||||||| || | || ||||| || | | ||| || || || Sbjct 2543 AGTACCAGCAATATAAGAGCCATTGGCACGAATGTTGTGCACGTTCAAACCGATACCACC 2602 Query 69885 TGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATC 69944 || | ||||| ||| |||||||| ||| || || || || ||||| || || ||| Sbjct 2603 AGCAGTCTTAGAAATTTGAGCACAAATTTTTAAGGTTTCGTAGATACCTTCGATAGAATC 2662 Query 69945 ATCTATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAA 70003 ||| |||| || || ||| || || |||||||||| || | ||| || ||||| | Sbjct 2663 ATCCTTCATAGTCAACAAG-AAGCAAGAAGACATTTGAGGACGAGGAGTACCAGCATTGA 2721 Query 70004 ATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAG 70063 | | |||||| || ||||| || | |||||| | || |||||||| ||||| | Sbjct 2722 AAAGAGTAGGACTGGCATGAGTAAAGTAACGTTCAGACATAAGGTTGTATGTCTCAATGG 2781 Query 70064 CTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTC 70123 | | || ||||| |||||| || | || |||||||| | || ||| || |||| Sbjct 2782 CGGCATCGATATCGTTGCCATGAATACCAACAGCAACACGCATGATCAAATGTTGTGGTC 2841 Query 70124 GTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAA 70183 ||| | ||| ||| || || | || ||| || || || || || || |||| Sbjct 2842 TTTCAGCAACCTTACCATTGATCTTGAGCAAGTAAGAACGCTCGAGTGTCTTGAAACCAA 2901 Query 70184 AATAGTTGTAT 70194 | | |||||| Sbjct 2902 AGAAATTGTAT 2912 >seq2381 Length=15399 Score = 257 bits (284), Expect = 2e-63 Identities = 563/841 (67%), Gaps = 23/841 (3%) Strand=Plus/Plus Query 39328 TTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 39387 |||||| ||| ||| || ||||| || || || || ||||||| | || || | || Sbjct 10618 TTGGTAGTCAGAAACACGCTTCTCAAAGAAGTTGGTCTTGCCTTGAAGAGAAATCATGTC 10677 Query 39388 CATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATCAA 39447 |||||||||||| || ||||| ||||| || | || | ||| || | | ||||| Sbjct 10678 CATGAAATCAAAGGGGTTAGTGGCATTGTAGATCTTATCAAAGCCAAGGGCAACCATCAA 10737 Query 39448 TCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTTT 39507 | ||| || || ||||| |||||| ||| | | | ||||| || || | || Sbjct 10738 ACGATCGGCGACGAATTCAATGTATTGGCACATAAGCTTAGCGTTCATACCAATCAAGTT 10797 Query 39508 AACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCGA 39567 || |||| ||| || || | || |||| ||| || | || ||||| || || | Sbjct 10798 GACAGGTAAAGCATCAGTCAAGAATTCTTGTTCAATACCAACAGCCTCAACAATGAT-GC 10856 Query 39568 TGTTACTACCTCATCACTCGGTGGATGCAAT-------AAATGTTTAAACATTAAGCAGG 39620 | || ||| | |||| || | ||| | || | |||| | || | Sbjct 10857 TCTTGATACGT------TCGGCAGAAGGAATCTTCTTGAGGTGAGTGAACAAGAGACAAG 10910 Query 39621 CGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAG 39680 | |||||| || || || ||||| | || || | ||||||||| || || | |||| Sbjct 10911 CAAAGTCAGTGTGAAGACCTTCATCACGACAGATAAGTTCGTTAGAGAAAGTCAAACCAG 10970 Query 39681 GCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGC 39740 |||| ||||||||||| |||||||| || || | ||||| || ||||| |||||||| | Sbjct 10971 GCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCAAATGAACCAGAGAAGAAGATAC 11030 Query 39741 CTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATT---ATGTATCC 39797 |||| || || ||||| ||||| | || ||| | || | || || | |||| Sbjct 11031 CTTCGACAGCAGCAAAGGCAACCAATCGCTCAGCAAAA---GAGTCGTTACCAGAGATCC 11087 Query 39798 ACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGA 39857 |||| ||||||||| || || ||| | ||| || || ||||| ||||||| ||| | Sbjct 11088 ACTTGAATGCCCAATCTGCCTTACGCTTGATACAGGGAATGGTTTCGATAGCATCAAACA 11147 Query 39858 GATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTG 39917 | ||||| | | ||||||| | || || || || |||| ||| || |||| | Sbjct 11148 ACATCTCCTTTTCTTGATTATCTTTGATGTAGGTGTCAATCAACAAACTGTAGGTTTCGG 11207 Query 39918 AATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTA 39977 ||||||||| ||||| || || || || || || |||||| | ||||||| || | || Sbjct 11208 CATGGATGTTCTCAATAGCAATTTGGAAACCATAGAAACATTTGGCTTCAGGGATCTTTA 11267 Query 39978 CCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAA 40037 | || ||| || ||| |||| |||||||| |||| |||||| | |||||| | Sbjct 11268 CTTCATCACAGAAGTTTTGAACCAAGTTTTCATTGACTACACCATCAGCACTGGCAAAGA 11327 Query 40038 ATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATT---CCAGTCAT 40094 | ||||| ||| | || || || ||| | | ||| ||| || ||| || | Sbjct 11328 AGGCCAAGACACGAGAGATGAAGAATCGTTCGTTGCTGTTCATTTTGTTCTCCCAATCGT 11387 Query 40095 TGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGT 40154 || || || | || | ||||||||| |||||||| || || || |||||||||| Sbjct 11388 GTTGGTCCTTGGACAAGTCAATTTCTTCAGCAGTCCAAAAGGAAGCTTCAGCCTTTTTGT 11447 Query 40155 A 40155 | Sbjct 11448 A 11448 >seq1825 Length=31147 Score = 95.1 bits (104), Expect = 2e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 68395 GCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAA 68454 |||||| |||| | || || ||||| || || |||| ||| ||||| | |||||| Sbjct 7816 GCGGGTCTTGTTCTAAGGTAATACATGCCTGTCTTCAAACCCTTCTTCCATGCATAGAAA 7875 Query 68455 TGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTT 68514 |||||| || || || |||| | || |||||| || | ||||| ||||| | Sbjct 7876 TGCATAGAGGTCAGCTTACCATAATTAGGTTCGGCTGTAAACAAGTTCATAGATTGGGAT 7935 Query 68515 TGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCC 68574 ||||| || ||||| || | ||| || ||||| | ||||| | |||||| |||||| Sbjct 7936 TGATCAATAAAAGCACCACGATCAGCAGCCATATCAATAATTGTTCTTTGAGAGATTTCC 7995 Query 68575 CAAATAGTCTTAAAAATCTGTTTGATATCATCTGG 68609 || | |||||| | | | |||| |||||| || Sbjct 7996 CAGACAGTCTTGTAGAGTTTCTTGAGATCATCAGG 8030 >seq2024 Length=32104 Score = 87.8 bits (96), Expect = 2e-12 Identities = 216/320 (68%), Gaps = 12/320 (4%) Strand=Plus/Minus Query 69547 CCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATA 69606 |||||||||||||| ||||||||||| ||||| || ||| |||| || || |||||| Sbjct 3684 CCAGGACATTCATTGGGACACATCAAAGACCATTCACCATTTTCCTCCACACGCTTCATA 3625 Query 69607 AATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTC-TA--TTTTCTTCATTT 69663 |||| || |||||||||||| | | | | | | | | || ||||||||| Sbjct 3624 AATAAATTGGGAATCCAAAGGCCGAGGAGCAAGTGACGAGCACGTAAGTTTTCTTCA--- 3568 Query 69664 CCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATAT 69723 || | |||||| ||||| | | || | ||||| | |||||| || || ||||| Sbjct 3567 CCGTTGTTTTTTGAGAGATCAATGTATTCAAATATATCTGGATGCCAAGGCTCAAGATAG 3508 Query 69724 ATCGCCATGACTCCC--GGTCGTTTATTTCCTCCCTGATCT-ATGTATCTGGCAGTGTTA 69780 || | | | | || | | ||| | | ||| | | | ||| | | || | | | Sbjct 3507 ATAG-AGTAAGTACCTTTGACCTTTCTAGC--CCCAGGTGTGATGAAGCGAGCTGCATCA 3451 Query 69781 TTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAA 69840 || | || | || ||| ||||| ||||||||||| | || || ||||||| ||||||| Sbjct 3450 TTGAATACACGCAACATAGGAATGATACCATTAGACGTTCCGTTGGTTCCAGCAATATAA 3391 Query 69841 CTTCCTCTTGCGCGAATATT 69860 |||| || ||||| || Sbjct 3390 GATCCTGAAGCACGAATCTT 3371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686884637982960