Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2381 246 2e-60 seq2193 181 8e-41 >seq2381 Length=15399 Score = 246 bits (272), Expect = 2e-60 Identities = 600/882 (68%), Gaps = 34/882 (4%) Strand=Plus/Minus Query 43730 ATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTG 43789 || |||||| | |||||||| || | || || |||||||| || |||||| |||| ||| Sbjct 11460 ATCTGGCAATTCTACAAAAAGGCTGAAGCTTCCTTTTGGACTGCTGAAGAAATTGACTTG 11401 Query 43790 ACTAAAGACTTAGCAC-ATTGG-ATTGCATTAAAACCA-CAA-GAAAAACATTTTATATC 43845 | || ||| | ||| ||||| | || | | || ||| ||| | || || || Sbjct 11400 TCCAAGGACCAA-CACGATTGGGAGAACAAAATGAACAGCAACGAACGATTCTTCATCTC 11342 Query 43846 TTTGGTTTTGGCGTTTTTTGCTGCGAGC-GACGGGATAGTCAATGAAAATTTGGTTAGTC 43904 | || ||||| || ||||| | || || || ||||||||||||| |||||| Sbjct 11341 TCGTGTCTTGGCCTTCTTTGCCA-GTGCTGATGGTGTAGTCAATGAAAACTTGGTTCAAA 11283 Query 43905 GGTT-TGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCC 43963 || || | | ||||| | | || ||||| |||||| ||||| || |||||||| Sbjct 11282 ACTTCTGTG-ATGAAGTAAAGATCCCTGAAGCCAAATGTTTCTATGGTTTCCAAATTGCT 11224 Query 43964 ATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGG 44023 || || || || ||| | |||| |||||| | |||| || || |||||||||||| Sbjct 11223 ATTGAGAACATCCATGCCGAAACCTACAGTTTGTTGATTGACACCTACATCAAAGATAAT 11164 Query 44024 CACGAGAAGCATCGATTGTTTAATGCGATAGAAAC-AGTACCTGCGATTAAACATAAAGC 44082 || || ||| | |||||| |||| || ||||| | | |||| || || | ||| || Sbjct 11163 CAAGAAAAGGAGATGTTGTTTGATGCTATCGAAACCATTCCCTGT-ATCAAGCGTAAGGC 11105 Query 44083 AGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTT 44142 ||| ||||| | || ||||| | || || ||||||| || ||| | || || || Sbjct 11104 AGATTGGGCATTCAAGTGGATCTCTGGTAACGACTCTTTTGCTGAGCGATTGGTTGCCTT 11045 Query 44143 TGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAA 44202 ||| | ||| ||||| || ||||| || || || ||||| | || || ||| | ||||| Sbjct 11044 TGCTGCTGTCGAAGGTATCTTCTTCTCTGGTTCATTTGCCTCTATCTTCTGGCTCAAGAA 10985 Query 44203 ACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGG-CT 44261 || ||| | |||||||| ||||| || || || || | || ||||||||||||| || Sbjct 10984 GCGTGGTCTCATGCCTGGTTTGACTTTCTCTAACGAACTTATCTGTCGTGATGAAGGTCT 10925 Query 44262 T-ACATTGCGATTTTGCTTG---CTTGTT-ACTTGGATATCTAGGAGACGATAAGCCTTC 44316 | ||| | || |||||||| |||||| ||| | || || || | ||||| Sbjct 10924 TCACACT--GACTTTGCTTGTCTCTTGTTCACT--CACCTCAAGAAG-----ATTCCTTC 10874 Query 44317 ATGTAAGACAATTACAGA-TATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGA 44375 || || | ||| || |||| ||||| || || ||||||||||| ||| Sbjct 10873 -TGCCGAACGTATCAAGAGCATCATTGTTGAGGCTGTTGGTATTGAACAAGAATTCTTGA 10815 Query 44376 CAACAGCATTACCTGTAAATTTAATAGGAATGAATG--AACTTTTGATGAACCAATATAT 44433 | || |||||||| || || || || ||||| | || || ||| |||||| || Sbjct 10814 CTGATGCTTTACCTGTCAACTTGATTGGTATGAACGCTAAGCTT--ATGTGCCAATACAT 10757 Query 44434 TGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAAACACTATATTGTACA 44493 ||||| | | || |||||||| | | | || || | ||||| ||| | || Sbjct 10756 TGAATTCGTCGCCGATCGTTTGATGGTTGCCCTTGGCTTTGATAAGATCTACAATGCCAC 10697 Query 44494 AAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAA 44553 ||||| |||||||| ||||| | ||||| | ||||||| || ||||| ||||| || Sbjct 10696 TAACCCCTTTGATTTCATGGACATGATTTCTCTTCAAGGCAAGACCAACTTCTTTGAGAA 10637 Query 44554 ACGCGTTGGAGAATATCAGCGAATGGGCGTCATGATAACAAG 44595 || ||| || || || || || |||||| |||||| Sbjct 10636 GCGTGTTTCTGACTACCAACGTGCTGGTGTCATG--AACAAG 10597 >seq2193 Length=22042 Score = 181 bits (200), Expect = 8e-41 Identities = 390/582 (67%), Gaps = 26/582 (4%) Strand=Plus/Minus Query 40862 TGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATG- 40920 |||||||||||| || ||||| ||||| ||||| | ||| || || || || ||||||| Sbjct 3417 TGAAGGTGATCTCGGACCTGTATATGGTTTTCAATGGCGTCACTTCGGTGCGAAATATGT 3358 Query 40921 ACACTATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATA 40980 | | | | | | |||||||| | |||| | ||||| | ||| ||||| |||| Sbjct 3357 AGATTGCG-ATACAGATTATACAGGTCAAGGCGTTGATCAGCTTCAGCAAGTTATTGATA 3299 Query 40981 CGATTAAATCCGATCC---CGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGG 41037 ||||||| | | || |||| |||| ||| || ||| | || ||||| || | | Sbjct 3298 CGATTAAGAACAACCCAACCGATCGCCG---TATTATTTTGAGTGCCTGGAATCCTGCTG 3242 Query 41038 ACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTG----- 41092 | | | | | ||||| || || |||||||||| || ||||| || || || | Sbjct 3241 ATATTCCTATCATGGCTTTACCTCCTTGTCATTCATTCTGTCAATTCTATGTCTCTACAC 3182 Query 41093 ----CAATGGTGAAC---------TGTCATGTCAATTGTATCAAAGATCAGGTGACATGG 41139 ||||||||| | |||| ||| ||| |||||||||||| |||| |||| Sbjct 3181 CTATCAATGGTGAGCCTGCTAAGTTGTCCTGTGTATTATATCAAAGATCATGTGATATGG 3122 Query 41140 GACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACG 41199 ||||||| || || |||||||| || ||||||||| | || |||||||| || | Sbjct 3121 GACTAGGTGTGCCATTTAACATTGCCTCTTATGCTCTTTTAACTCGAATGATTGCCCATG 3062 Query 41200 TTACCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTA 41259 | || |||| | ||||| |||||| | || || | || ||| |||| | || || Sbjct 3061 TAACTGATTTGGAGCCTGGAGAATTTATACATACTATGGGCGATACACATGTGTATGTTG 3002 Query 41260 ATCACATAGAGCCGTTAACAGAACAACTGACACGAAAACCTAGACCATTTCCAACGCTAC 41319 | ||| | || | | | ||||| | | || ||||||||||||| || || || Sbjct 3001 ACCACTTGGAAGGGCTCAAGCAACAAATCCAAAGAGAACCTAGACCATTCCCTACATTAA 2942 Query 41320 TTATTAAACGCGCTGTTGAAAACATTGATGATTTTTGCATCGATGATTTTGTCGTTTGCG 41379 || || || ||| ||| || || || || |||| ||||||||| || Sbjct 2941 AGATAAATCGTAAAGTTACAAATATAGACGACTTCAAATTCGAAGATTTTGTCCTTGAAA 2882 Query 41380 ATTACAATCCGTACCCTAAAATCCACATGGACATGTCTGTAT 41421 | || ||||| | |||||| ||||| | |||||||||| Sbjct 2881 ACTATAATCCCCATGGTAAAATTGACATGAAAATGTCTGTAT 2840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397442368998070