Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq2078 123 2e-23 seq244 102 7e-17 seq2232 91.5 1e-13 >seq2078 Length=27221 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | || | |||| ||||| ||||| ||||| || || |||||||| Sbjct 1058 CCTCCACGGAGACGAAGCACCAGATGTAGTGTAGATTCTTTCTGGATGTTGTAGTCTGAT 1117 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | ||| | ||||| | ||||| ||||| |||| ||||||||||| || || || Sbjct 1118 AGAGAGCGACCATCTTCTAATTGTTTGCCGGCAAAAATAAGACGCTGTTGGTCTGGTGGA 1177 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| |||||||| ||||| | || | | |||| | || || | || ||| ||| Sbjct 1178 ATACCTTCTTTATCTTGAATCTTTTGCTTGACGTTTTCAATAGAATCAGAGGATTCGACT 1237 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||||| || || | |||||| || || || |||||||||||||||||| Sbjct 1238 TCTAGTGTGATTGTTTTGCCTGTGAGTGTCTTCACAAAGATTTGCATA 1285 >seq244 Length=4003 Score = 102 bits (112), Expect = 7e-17 Identities = 232/343 (68%), Gaps = 7/343 (2%) Strand=Plus/Plus Query 131648 ACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTC 131707 || |||| ||| || | ||| || ||||| | || || |||| || | |||| | | Sbjct 2313 ACACGCTCCATGAAGAGATCAGGTACCCAAAGAGCATAGAACAAGTCACGAGCTCTAATT 2372 Query 131708 TCTTCTGTACCCATAAtttttttCAAATTTAA-AAAGTCCAAAATGTCCGCATGCCAGGG 131766 || ||| |||| | | ||| |||||| ||| ||||| ||||| || | ||||| || Sbjct 2373 TCATCTTTACCAAAGTTCTTTCTCAAATCTAAGAAAGTG-AAAATATCAGGGTGCCATGG 2431 Query 131767 TTCCAAATACACTGCCATTGCGCCTTTGCGCTT---ACCGCCTTGATTAACATGACGAAC 131823 |||||| |||| || | || || ||||| ||| || |||| ||||| |||| | Sbjct 2432 TTCCAAGTACATAGCAAAGGCACCGGGACGCTTGTTACCACCCTGATCAACATAACGAGC 2491 Query 131824 CATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTT 131883 | |||||| | || |||||||||||| | || || | | || || || | Sbjct 2492 AGTATTGTTGAAGACACGCAACATGGGCAAAAGGCCATTAGAATAACCGTTAGTACCAGC 2551 Query 131884 AATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCC-GCCGTATT 131942 ||| || ||||||||| | || ||||| ||||| | || ||||| || || || | Sbjct 2552 AATATAAGAGCCATTGGCACGAATGTTGTGCACGTTCAAACCGATACCACCAGCAGT-CT 2610 Query 131943 TAGAGATTAGTGCGCATTTGGTTAGAGTGTTATAGATACCTTC 131985 |||| ||| | || || | ||| || | ||||||||||| Sbjct 2611 TAGAAATTTGAGCACAAATTTTTAAGGTTTCGTAGATACCTTC 2653 >seq2232 Length=20840 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 27091 CGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTT 27150 ||||||| | ||| ||||| ||| |||||||||| ||||| || || || | || || | Sbjct 585 CGTCTTCCAACTGCTTACCAGCGAAAATGAGACGTTGTTGGTCTGGAGGRATGCCTTCCT 644 Query 27151 TATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTA 27210 | || |||||| | || | |||| | || || | | |||||| |||| || | Sbjct 645 TGTCTTGGATCTTTTGCTTTACATTTTCGATAGAATCAGATGATTCAACCTCTAAGGTGA 704 Query 27211 TAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | | |||||| || ||||| || ||||||||||||||| Sbjct 705 TGGTTTTGCCAGTAAGAGTCTTGACAAAGATTTGCATA 742 Score = 89.7 bits (98), Expect = 4e-13 Identities = 161/235 (69%), Gaps = 1/235 (0%) Strand=Plus/Plus Query 27015 TTATTG-CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTA 27073 |||||| || || || | || | ||||| || | ||||| |||||||| |||||||| Sbjct 280 TTATTGACCACCACGAAGACGAAGAACCAAGTGAAGGGTAGATTCTTTTTGGATATTGTA 339 Query 27074 GTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATC 27133 ||| | || | ||||| | |||||||| || | || ||||| ||||| || Sbjct 340 GTCAGAAAGAGAACGGCCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGTTGGTC 399 Query 27134 CGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGC 27193 || || | ||| || || || |||||| | || | | | || | | ||| | || Sbjct 400 TGGGGGRATACCTTCCTTGTCTTGGATCTTTTGCTTGACGTTCTCAATGGAGTCGGAGGA 459 Query 27194 TTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||| ||||| | ||| |||| ||||| || ||||| || || || || |||||| Sbjct 460 TTCGACTTCCAAAGTMATAGTCTTGCCAGTAAGAGTCTTAACRAAAATCTGCATA 514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424919826609168