Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq244 165 1e-35 seq2381 132 6e-26 seq1825 116 5e-21 >seq244 Length=4003 Score = 165 bits (182), Expect = 1e-35 Identities = 880/1396 (63%), Gaps = 26/1396 (2%) Strand=Plus/Plus Query 118181 ATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGA 118240 ||||| |||| ||||| || || || || |||||| |||||||||||| | || || Sbjct 1463 ATAGAGGTTGGAGGTGTAAGGTTCGAAACATTCATTGAAACCCAAGATTTGAGAGGTAGA 1522 Query 118241 GGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTC 118300 || || ||||| || || | | || |||||| | ||| | || ||| ||| Sbjct 1523 AGCAGTTGGCATAGGAGCAACCAAGAGTGAGTTACGAACACCATGTTGAGCAATTTTTTC 1582 Query 118301 CTTGAGAGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAG 118360 |||||| |||| || || | | | | | |||||||||| | || | Sbjct 1583 CTTGAGCTTAACCCAATCCCAGAGGTCAGTGGGAGTGACATTCCACATATCATATTGCAA 1642 Query 118361 GATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAA 118420 | ||| | |||| | || || | | || ||||| |||| | || |||| Sbjct 1643 TACACCCTTGGACACAGGACTGCCGGGATAGGTTTCATAGTAACCCTTTTCTTCAGCCAG 1702 Query 118421 TTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGC 118480 ||| | || || | || |||||||| |||||||||||||| || ||| | | Sbjct 1703 CTCGCAAGAAGCTTCTAAAGCAGCGTGATAGATTGTTTCAAAAATTTGAATATTGAGTTG 1762 Query 118481 CTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAA-ATAAATACATCCGCGAGACCTT 118539 ||| || || ||||| || || | | || || |||||| || |||||||||| Sbjct 1763 CTTAGCTTCAGGAGAATCGAAAGCAAA-CTTCATTAACATAAATGTGTCTGCGAGACCTT 1821 Query 118540 GGACACCGAGGCCAATTGGGCGATGTCTCATATTAGA-CTTCCGAGCGGTCTCCACGGGA 118598 | ||||| || || || ||||| || | | | || || | | | ||| || ||| Sbjct 1822 GAACACCTAGACCGATAGGGCGGTGACGCTTGTTTGAGCGTTC-AGCTTCAATGACAGGA 1880 Query 118599 TAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGA 118658 ||| | || ||||||| | | |||| | ||| | |||| || || || ||||| Sbjct 1881 TAATAGTTGATATCGATGATCTTATTCAAGTTTCTAGTGATTACTTTAACGACATCATGC 1940 Query 118659 AGCTTTTCGTAATCAAAACTGCGAGTCTCTTCA---TTGACATACTTAGGAAGG----GC 118711 | ||| | | | || |||| |||| |||||| || ||| || || Sbjct 1941 AACTTCTGGAAGTCGTAACT---------TTCACGGTTGACA-ACAAAGGTGGGCAAAGC 1990 Query 118712 GATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGT 118771 || || |||| ||||| |||| ||||| || ||| || | |||||| || Sbjct 1991 AATGGAAGCCAAGTTACAGACAGCAACTTCATCAGGGCTAGAGTATTCAACAATTTCTGT 2050 Query 118772 GCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGC 118831 |||||||| || ||| || || |||||||| | || || |||| ||||||| || Sbjct 2051 ACACAAGTTACTACACTTGATAGTACCCAAGTTTTGCTGGTTACTCTTTCTGTTACAGGC 2110 Query 118832 ATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCA 118891 |||||| || |||||| |||| | || || || ||||| | | || ||||| | ||| Sbjct 2111 ATCCTTATAGAGCATGAATGGATTACCGGTTTCAGTTTGAGCTTCAAGGATAGCATACCA 2170 Query 118892 GACATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAG 118951 | | || | || | | |||| || || | || |||||| ||| | Sbjct 2171 CAATTTTTGTGCCTTGATTGTTTCTCTAGCTCTGCCTTCCTTTTCATACTTTTCGTATAA 2230 Query 118952 GGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAG 119011 || |||| || |||||| | || | || || || || | || || ||||| | Sbjct 2231 TGCAACAAATTCATCACCCCATACTTCACAAAGTCCAGGAGCTTCATTAGGACAGAACAA 2290 Query 119012 AGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGA 119071 ||||||| |||| || || |||| ||||||||| || || | ||| || || | Sbjct 2291 GGACCATTCACCATTGTCACGTACACGCTCCATGAAGAGATCAGGTACCCAAAGAGCATA 2350 Query 119072 GAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAA-AAAGT 119130 ||| | || ||| | | ||| || | || || | ||| || || ||||| Sbjct 2351 GAACAAGTCACGAGCTCTAATTTCATCTTTACCAAAGTTCTTTCTCAAATCTAAGAAAGT 2410 Query 119131 CCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACG---AC 119187 | ||||| | |||||| ||||||| ||||| || | | || ||| || Sbjct 2411 GAAA-ATATCAGGGTGCCATGGTTCCAAGTACATAGCAAAGGCACCGGGACGCTTGTTAC 2469 Query 119188 CAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCAT 119247 || |||| | ||||| | ||||| ||| || ||||| | ||| || | | |||| Sbjct 2470 CACCCTGATCAACATAACGAGCAGTATTGTTGAAGACACGCAACATGGGCAAAAGGCCAT 2529 Query 119248 CGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGTGCA 119307 || | || || || || |||| ||| |||||| | | | ||| | || || Sbjct 2530 TAGAATAACCGTTAGTACCAGCAATATAAGAGCCATTGGCACGAATGTTGTGCACGTTCA 2589 Query 119308 TACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCC 119367 ||| ||||| || || ||| || ||||| || || | | | ||||||| | Sbjct 2590 AACCGATACCACCAGCAGTCTTAGAAATTTGAGCACAAATTTTTAAGGTTTCGTAGATAC 2649 Query 119368 CATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTG 119427 | ||||| || ||| |||| | | | | |||||| ||||||||||| | || | Sbjct 2650 CTTCGATAGAATCATCCTTCATAGTCAACAAGAAGCAAGAAGACATTTGAGGACGAGGAG 2709 Query 119428 TACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTGTCGT 119487 ||||||| ||||| ||||| || | || || | || || || ||||| || || Sbjct 2710 TACCAGCATTGAAAAGAGTAGGACTGGCATGAGTAAAGTAACGTTCAGACATAAGGTTGT 2769 Query 119488 AGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACA 119547 | ||||| | | |||| || || | || |||||||| | | || ||||| | || Sbjct 2770 ATGTCTCAATGGCGGCATCGATATCGTTGCCATGAATACCAACAGCAACACGCATGATCA 2829 Query 119548 TGTATTGGGGTGTTTC 119563 | ||| ||| |||| Sbjct 2830 AATGTTGTGGTCTTTC 2845 >seq2381 Length=15399 Score = 132 bits (146), Expect = 6e-26 Identities = 195/273 (71%), Gaps = 5/273 (2%) Strand=Plus/Plus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || ||| ||||| || ||||| |||| ||||| || ||||| || ||| Sbjct 10910 GCAAAGTCAGTGTGAAGACCTTCATCACGACAGATAAGTTCGTTAGAGAAAGTCAAACCA 10969 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 ||||||||||| |||||||| | |||||| || | |||||| |||||||||||||| Sbjct 10970 GGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCAAATGAACCAGAGAAGAAGATA 11029 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAAC 130195 || || ||| || || |||| | ||||||||||| ||| | || | | | Sbjct 11030 CCTTCGACAGCAGCAAAGGCAACCAATCGCTCAGCAAAAGAGTCG---TTACCAGAGATC 11086 Query 130196 CACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAG 130255 ||||| | ||||| | ||||| || |||||| || | ||| | ||| || ||||| Sbjct 11087 CACTTGAATGCCCAATCTGCCTTACGCTTGATACAGGGAATGGTTTCGATAGCATCAAAC 11146 Query 130256 AGTTCCTTCTTTTC-TGATGGATCTTTGATGTA 130287 | || |||||| |||| |||||||||||| Sbjct 11147 AACATCTCCTTTTCTTGAT-TATCTTTGATGTA 11178 >seq1825 Length=31147 Score = 116 bits (128), Expect = 5e-21 Identities = 310/470 (66%), Gaps = 38/470 (8%) Strand=Plus/Plus Query 117832 TTGATCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTG 117891 ||| || ||||| ||||| || ||||| | |||| |||||| ||||| | |||||| | Sbjct 7823 TTGTTCTAAGGTAATACATGCCTGTCTTCAAACCCTTCTTCCATGCATAGAAATGCATAG 7882 Query 117892 AGGACAACTTGG----AGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGA 117947 ||| || ||| | |||| | || | || | ||||||| |||||||||| Sbjct 7883 AGGTCAGCTTACCATAATTAGGTTCGGCTGTA----AACAAGTTCATAGATTGGGATTGA 7938 Query 117948 TCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTT-----GATTT 118002 || || || || ||||| || ||||||||||| | || |||| ||||| Sbjct 7939 TCAATAAAAGCACCACGATCAGCAGCCATATCAATAA-----TTGTTCTTTGAGAGATTT 7993 Query 118003 CCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGG 118062 |||| |||||| ||||||| ||||| | |||||| |||||| ||| | ||| Sbjct 7994 CCCAGACAGTCTTGTAGAGTTTCTTGAGATCATCAGGGATAGTAGGGATTTCTTG----- 8048 Query 118063 ATCCACCCGCCTTGACCATGAG-ATCCTTCATATCCT-----TTG----ACCAGAGACCA 118112 | || | ||| |||||||| | | |||||| || ||| |||||||||| Sbjct 8049 -TACA-CTGCC---ACCATGAGCAATCATCATATTCTTGAGGTTGTCGCTCCAGAGACCA 8103 Query 118113 ATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTG 118172 ||| ||||| | || ||||| | ||||| || || ||||| || Sbjct 8104 CGCTTGACAAGATCGTTCAAAAGATGTTGGTTGACCACTTGGAATTCACCACTCTGGACA 8163 Query 118173 CGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGG 118232 || | |||||| || | || || || |||||||| || |||||||||||||||| Sbjct 8164 CGACGGGTATAGATGTTACTTGTATAAGGTTCAAAGCATTCTGTGTTACCCAAGATTTGA 8223 Query 118233 GCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACC 118282 || |||||| ||||| || || | | ||| |||||| | ||| Sbjct 8224 CTGGTACTGGCTGTAGGCATAGGCGCTAACAAAAGTGAGTTACGAACACC 8273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618413446541840