Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq2193 104 2e-17 >seq2193 Length=22042 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 111729 ATAAACATGCGCATCTCCTATACAATGGATCAATTCCCAAGGCTCCAAACCAGTGATGTG 111788 ||| ||||| | ||| || ||| ||| || ||||| | |||||||||| |||| | || Sbjct 3006 ATACACATGTGTATCGCCCATAGTATGTATAAATTCTCCAGGCTCCAAATCAGTTACATG 3065 Query 111789 TGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACCTAGGCCCAT 111848 |||||||| || | ||| ||| ||||||||||||||||||||||| ||||| Sbjct 3066 GGCAATCATTCGAGTTAAAAGAGCATAAGAGGCAATGTTAAATGGCACACCTAGTCCCAT 3125 Query 111849 ATCTCCCGATCTTTGATATA 111868 ||| | ||||||||||||| Sbjct 3126 ATCACATGATCTTTGATATA 3145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391932157980682