Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq2381 91.5 2e-13 seq244 82.4 8e-11 >seq2381 Length=15399 Score = 91.5 bits (100), Expect = 2e-13 Identities = 99/129 (77%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 59991 GCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCT 60049 || ||||| ||| || ||||| |||||||||||||| || || |||| |||||||| Sbjct 11049 GCCTTTGC-TGCTGTCGAAGGTATCTTCTTCTCTGGTTCATTTGCCTCTATCTTCTGGCT 10991 Query 60050 CAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGA 60109 ||| |||||||| |||||||| || ||| |||||| ||||| || || | || || || Sbjct 10990 CAAGAAGCGTGGTCTCATGCCTGGTTTGACTTTCTCTAACGAACTTATCTGTCGTGATGA 10931 Query 60110 GGGCCTCCA 60118 || || || Sbjct 10930 AGGTCTTCA 10922 >seq244 Length=4003 Score = 82.4 bits (90), Expect = 8e-11 Identities = 112/152 (74%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 78187 CGTGTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATA 78246 || || |||||||||||||| || |||||||||||||| | ||| || || | ||||||| Sbjct 1113 CGAGTACGCAAATAGTACATACCGGTCTTGAGACCCTTTTGCCAACCATAGAAGTGCATA 1172 Query 78247 CTCGACAGCTTGGCCAGACTCGGGTTC-TCCATGAAGATGTTGAGCGACTGGGAC--TGG 78303 || | || || ||| | | ||||| | |||||||| || | ||| ||| || Sbjct 1173 CTTGTCA-ATTTACCAAAGTTAGGTTCAGCAATGAAGATATTCA--AACTTTGACTTTGA 1229 Query 78304 TCGATGTACGCACCGCGGTCGGCCGCCATGTC 78335 || ||||| ||||| || || || ||||| || Sbjct 1230 TCAATGTAAGCACCACGATCAGCAGCCATATC 1261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548505505640160