Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq244 122 1e-22 seq205 89.7 6e-13 seq2120 87.8 2e-12 >seq244 Length=4003 Score = 122 bits (134), Expect = 1e-22 Identities = 308/461 (67%), Gaps = 8/461 (2%) Strand=Plus/Minus Query 53242 TGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAA 53301 |||||| ||| || | ||| || |||||||| || |||| || || || ||||| Sbjct 2777 TGAGACATACAACCTTATGTCTGAACGTTACTTTACTCATGCCAGTCCTACTCTTTTCAA 2718 Query 53302 CGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTC 53361 |||||||| || ||||| ||||| |||||| || || | ||||||||||| || Sbjct 2717 TGCTGGTACTCCTCGTCCTCAAATGTCTTCTTGCTTCTTGTTGACTATGAAGGATGATTC 2658 Query 53362 GATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGG 53421 ||||| || |||||||| || | || ||||| || || || ||| | ||||| Sbjct 2657 TATCGAAGGTATCTACGAAACCTTAAAAATTTGTGCTCAAATTTCTAAGACTGCTGGTGG 2598 Query 53422 TATCGGTATCCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACG 53480 ||||||| | || ||| | ||| | ||||| || ||| | || || || |||| Sbjct 2597 TATCGGTTTGAACGTGCAC-AACATTCGTGCCAATGGCTCTTATATTGCTGGTACTAACG 2539 Query 53481 GCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCA 53540 | | |||| | |||| ||| | || ||||||||||| || || || || || Sbjct 2538 GTTATTCTAATGGCCTTTTGCCCATGTTGCGTGTCTTCAACAATACTGCTCGTTATGTTG 2479 Query 53541 ACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCG 53600 | ||||||||| ||||| || | || || || ||| | || || |||||| | | Sbjct 2478 ATCAGGGTGGTAACAAGCGTCCCGGTGCCTTTGCTATGTACTTGGAACCATGGCACCCTG 2419 Query 53601 ACATTATGGAGTTTC-TCGAGCTGCGTCTGAATCAGGGTGACGAAGAGAT--GCGCTGCC 53657 | ||| | | |||| | || || | ||| ||| | || || || | ||| | Sbjct 2418 ATATT-TTCACTTTCTTAGATTTGAGAAAGAACTTTGGTAAAGATGAAATTAGAGCT--C 2362 Query 53658 GTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATG 53698 ||||| |||| ||||| ||| | || || ||||||||| Sbjct 2361 GTGACTTGTTCTATGCTCTTTGGGTACCTGATCTCTTCATG 2321 Score = 82.4 bits (90), Expect = 8e-11 Identities = 113/156 (72%), Gaps = 4/156 (3%) Strand=Plus/Minus Query 55773 TGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCA--GTCCCAGTCTCTGAACAT 55830 || |||| ||| ||||||||||||||| ||||| || || ||| ||| | ||| || Sbjct 1266 TGGTTGATATGGCTGCTGATCGTGGTGCTTACATTGATCAAAGTCAAAGTTT--GAATAT 1209 Query 55831 CTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAA 55890 |||||| | | ||| | | || |||| |||||||| || || ||| | || Sbjct 1208 CTTCATTGCTGAACCTAACTTTGGTAAATTGACAAGTATGCACTTCTATGGTTGGCAAAA 1149 Query 55891 GGGACTCAAGACGGGTATGTACTATCTGCGGACCCG 55926 ||| |||||||| |||||||||||| |||| || || Sbjct 1148 GGGTCTCAAGACCGGTATGTACTATTTGCGTACTCG 1113 >seq205 Length=4540 Score = 89.7 bits (98), Expect = 6e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 153832 AATTTTGAACTGAAAACGTTAGCCAACTTGGCACCGTAACCATTGCGACCGCCCGTCACG 153891 |||| | |||||| | |||| | ||||||||| ||||| || ||||| || || || Sbjct 1990 AATTCGGTACTGAAGATGTTACAGAGCTTGGCACCATAACCGTTACGACCACCAGTGACC 1931 Query 153892 CGTTGTTCCTCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGTTCAGG 153950 | ||| ||||||||||||||||| |||||| ||||| ||||| || |||||||| Sbjct 1930 TTCTTTTCATCGTCGTTGTAGTTGGAAGAGGTCAAGAGGTGACCAAAAATCAGTTCAGG 1872 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 119066 AATTTCGAACTGAACACGTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACG 119125 |||| | |||||| | ||| ||||||||||| || ||||| |||||||| || || Sbjct 1990 AATTCGGTACTGAAGATGTTACAGAGCTTGGCACCATAACCGTTACGACCACCAGTGACC 1931 Query 119126 CGCTGCTCCTCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCGGG 119184 || || ||||||||||||||||| |||||| ||||| ||||| || || || || Sbjct 1930 TTCTTTTCATCGTCGTTGTAGTTGGAAGAGGTCAAGAGGTGACCAAAAATCAGTTCAGG 1872 >seq2120 Length=25072 Score = 87.8 bits (96), Expect = 2e-12 Identities = 234/350 (67%), Gaps = 7/350 (2%) Strand=Plus/Minus Query 124499 ACGGATGCTGTGCGTCTCACCCGT-GCCAATCACGAAATCTTCGGGAATCGACTGCTGCA 124557 ||||| |||| || ||||| || ||||| || || |||| || | || || | Sbjct 11710 ACGGACAGTGTGGGTTTCACCAGTAGCCAAG-ACAAAGTCTTGAGGCTTGTCTTGTTGAA 11652 Query 124558 ACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGCATCCA 124617 ||| |||||||| ||| || || || || || ||||| || ||||||||||| | Sbjct 11651 GCATGAGCCACATACCTTCAACATAATCACGGGCATGACCCCAATCACGCTTGGCATCAA 11592 Query 124618 GGTTTCCGAGCTCGATT--GGCTTGGCCGTCTTGTTCCAC-TCCGCCAAACCCAGTGTAA 124674 ||| || || | || | |||| | | | | || || | | | | |||| Sbjct 11591 TGTTACCAAGGTAGAGACAGTCTTGACGACCCAAATGAATATCAGCAACAGCACGAGTAA 11532 Query 124675 TCTTGCGCGTCAC-AAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGAATGCCA 124733 |||| || || || ||| | || || || || ||| ||||||||||| || || || Sbjct 11531 TCTTACGTGTGACGAAAGTACGA-CCACGACGAGGAGATTCGTGGTTGAAGAGGATACCG 11473 Query 124734 GTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACCCAAAGAGC 124793 |||| ||| |||| | || || || |||||||| ||||| || ||| ||||| Sbjct 11472 TTACAGGCATACATGTCATAGGATTCACGGTAGTTGACTACAATCCAGTAACCATAGAGC 11413 Query 124794 TTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTCATTTTG 124843 |||| || |||||||| || ||||| ||||| ||| |||| ||||| Sbjct 11412 TTGGCAACACCATAGGGAGAACGAGGGTAAAATGGTGTGGTTTCCTTTTG 11363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547196751677200