Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2232 168 8e-37 seq2078 140 4e-28 seq1425 127 2e-24 seq244 116 4e-21 seq1825 105 8e-18 seq205 84.2 2e-11 >seq2232 Length=20840 Score = 168 bits (186), Expect = 8e-37 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||||||||| ||||| ||||| || || || | |||||||| ||| | Sbjct 741 ATGCAAATCTTTGTCAAGACTCTTACTGGCAAAACCATCACCTTAGAGGTTGAATCATCT 682 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 ||| || | |||| | ||| || || || |||||||| || || ||||||||||| Sbjct 681 GATTCTATCGAAAATGTAAAGCAAAAGATCCAAGACAAGGAAGGCATYCCTCCAGACCAA 622 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| ||||| ||||||||||| | || || | ||| | || | ||||| || Sbjct 621 CAACGTCTCATTTTCGCTGGTAAGCAGTTGGAAGACGGCCGTTCTCTCTCTGACTACAAC 562 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||||||||| | ||| | |||||||| ||||| Sbjct 561 ATCCAGAAGGAGTCCACTCTTCACTTGGTCCTTCGTCTTCGTGGTGG 515 Score = 143 bits (158), Expect = 3e-29 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| ||||| ||||||||||| ||| | || || || || Sbjct 513 ATGCAGATTTTYGTTAAGACTCTTACTGGCAAGACTATKACTTTGGAAGTCGAATCCTCC 454 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || ||||| || | ||| || || || |||||||| || || || |||||||| Sbjct 453 GACTCCATTGAGAACGTCAAGCAAAAGATCCAAGACAAGGAAGGTATYCCCCCAGACCAA 394 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || ||||||||||| ||| | || |||| ||| | || | ||||| ||| Sbjct 393 CAACGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGCCGTTCTCTTTCTGACTACAAT 334 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 ||||||| ||||| || ||||| | || | |||||||| ||||| ||| Sbjct 333 ATCCAAAAAGAATCTACCCTTCACTTGGTTCTTCGTCTTCGTGGTGGTCAA 283 Score = 125 bits (138), Expect = 8e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || ||||| || || || ||||| || ||| | || || || || Sbjct 969 ATGCAAATTTTCGTTAAGACCCTCACTGGTAAGACCATCACTTTGGAAGTCGAATCCTCC 910 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || ||||| || | ||| || || || |||||||| || || || |||||||| Sbjct 909 GACTCCATTGAGAACGTCAAGCAAAAGATCCAAGACAAGGAAGGTATCCCCCCAGACCAA 850 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || ||||||||||| ||| | || |||| ||| | || | ||||| ||| Sbjct 849 CAACGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGCCGTTCTCTTTCTGACTACAAT 790 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||| ||||| || ||||| | || | |||||||| ||||| Sbjct 789 ATCCAAAAAGAATCTACCCTTCACTTGGTTCTTCGTCTTCGTGGTGG 743 >seq2078 Length=27221 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| ||||| || || ||||| || || || || || || || || | Sbjct 1284 ATGCAAATCTTTGTGAAGACACTCACAGGCAAAACAATCACACTAGAAGTCGAATCCTCT 1225 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 ||| |||| ||| | ||| || ||||| || || || || ||||| |||||||| Sbjct 1224 GATTCTATTGAAAACGTCAAGCAAAAGATTCAAGATAAAGAAGGTATTCCACCAGACCAA 1165 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| |||||||| || || ||| | || |||| ||| | ||| ||||||| || Sbjct 1164 CAGCGTCTTATTTTTGCCGGCAAACAATTAGAAGATGGTCGCTCTCTATCAGACTACAAC 1105 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || ||||| || || ||||| || | ||||| || || || Sbjct 1104 ATCCAGAAAGAATCTACACTACATCTGGTGCTTCGTCTCCGTGGAGG 1058 >seq1425 Length=32788 Score = 127 bits (140), Expect = 2e-24 Identities = 129/168 (77%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||||| ||| | ||| || ||||| |||||||| || ||||| |||||||| Sbjct 31350 TGACACCATTGACAATGTCAAGCAAAAGATTCAAGACAAGGAAGGTATTCCCCCAGACCA 31291 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || ||||| || ||||||||||||||| | || |||| |||| | || | ||||| || Sbjct 31290 ACAACGTCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCGTTCTCTTTCYGACTACAA 31231 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||||||||| || ||||| | || | |||||||| ||||| Sbjct 31230 CATCCAAAAGGAATCTACCCTTCACTTGGTTCTCCGTCTTCGTGGTGG 31183 >seq244 Length=4003 Score = 116 bits (128), Expect = 4e-21 Identities = 246/360 (68%), Gaps = 8/360 (2%) Strand=Plus/Plus Query 81379 CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCA 81438 |||||||| | || ||||| ||||| ||| || ||||||||||| || | | ||| Sbjct 2469 CCACCCTGATCAACATAACGAGCAGTATTGTTGAAGACACGCAACATGGGCAAAAGGCCA 2528 Query 81439 TCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCT--TGCTGATTG 81496 | || | |||||| ||||| | ||| || || ||||| || | | ||| || Sbjct 2529 TTAGAATAACCGTTAGTACCAGCAATATAAGAGCCATTGGCACGAATGTTGTGCACGTTC 2588 Query 81497 AAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAA 81556 || |||||| ||||| | ||| ||||| |||||||| || | ||| || || | Sbjct 2589 AA--ACCGATACCACCAGCAGTCTTAGAAATTTGAGCACAAATTTTTAAGGTTTCGTAGA 2646 Query 81557 TTCCCTCGATGCTATCTTTTTTCAT-GTCAAGCAAGAAACAGCTTGACATCTGAGGGCTT 81615 | || ||||| ||| | ||||| ||||| |||||| || ||||| ||||| | Sbjct 2647 TACCTTCGATAGAATCATCCTTCATAGTCAA-CAAGAAGCAAGAAGACATTTGAGGACGA 2705 Query 81616 TTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGG 81675 | || |||||||| || || || | || ||| | || ||||| | ||||| ||| Sbjct 2706 GGAGTACCAGCATTGAAAAGAGTAGGACTGGCATGAGTAAAGTAACGTTCAGACATAAGG 2765 Query 81676 TCATAGGTTTCCTTGAC-GCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCAT 81734 | || || || || | || | | ||||||| || |||||||| | ||| |||||||| Sbjct 2766 TTGTATGTCTCAATGGCGGCATCG-ATATCGTTGCCATGAATACCAACAGCAACACGCAT 2824 >seq1825 Length=31147 Score = 105 bits (116), Expect = 8e-18 Identities = 292/441 (66%), Gaps = 15/441 (3%) Strand=Plus/Plus Query 81318 AAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG--- 81374 |||||| | || || |||||| || || || |||| ||| | || || || Sbjct 9365 AAAGTCAAAGACATCAATATGCCAAGGTTCAAGGTACATGGCAAAGTTACCATTACGCTT 9424 Query 81375 ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGAT 81434 || ||||| || | || |||| || || | ||||| ||||| | |||||| | || Sbjct 9425 ACCACCACCTTGAGTTACAAAACGAGCTGTGTCATTAAAGACACGAAGCATAGGCACAAT 9484 Query 81435 ACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGAT 81494 ||||| || ||| || ||||| | || || || | | || | ||| || Sbjct 9485 ACCATTGGATGTACCATTGGTACCAGCAATGTAAGAACCAGAGCCACGGATCTTTTGGAA 9544 Query 81495 TGAAAGACCGATGCCACCTGACCACTTT-GAAATCTGAGCACACCGGTTCATG--GTCTC 81551 ||| | ||||| ||||| | | |||| || || ||||||| |||| | || || Sbjct 9545 TGAGACACCGACACCACCAG-CAGCTTTAGAGATACGAGCACA--GGTTGTTAAAGTGTC 9601 Query 81552 ATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGG 81611 ||| || || ||||| ||||||| |||||| | | | ||||||||| || | ||||| Sbjct 9602 ATAGATACCTTCGATACTATCTTCTTTCATCTGGACAAGGAAACAGCTGGATAATTGAGG 9661 Query 81612 GCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACAT 81671 | || || |||||||| || || || || || ||| ||||||| | ||||| Sbjct 9662 CTTAGGTGTACCCGCATTGAAGAGGGTGGGTGTAGCATGAGTGAAATATTTGGAGGACAT 9721 Query 81672 CAGGTCATAGGTTTCCTTGACG---CGTGGAATATCGTCACCGTGAATACCGATAGCTAC 81728 || || || || ||||| | | | | ||| | ||| || ||||| | |||||| Sbjct 9722 GAGATCGTATGT---CTTGAAGGCACTTTCTAGATCTTGACCATGGATACCAAGAGCTAC 9778 Query 81729 ACGCATAAACATGTACTGGGG 81749 |||||||| |||||| || || Sbjct 9779 ACGCATAATCATGTATTGAGG 9799 Score = 86.0 bits (94), Expect = 7e-12 Identities = 290/447 (65%), Gaps = 5/447 (1%) Strand=Plus/Plus Query 80044 AGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAACTGAGC 80103 || || |||||||| ||||| | ||||||||||| | || | |||||||| | ||| Sbjct 7831 AGGTAATACATGCCTGTCTTCAAACCCTTCTTCCATGCATAGAAATGCATAGAGGTCAGC 7890 Query 80104 TTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATGAAAGCC 80163 || || | || | | | || | ||||| ||| || || ||| || ||||| Sbjct 7891 TTACCATAATTAGGTTCGGCTGTAAACAAGTTCATAGATTGGGATTGATCAATAAAAGCA 7950 Query 80164 CCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGTACGATAC 80223 |||||||| || ||||| |||||||||| |||| | |||||||| || || || Sbjct 7951 CCACGATCAGCAGCCATATCAATAATTGTTCTTTGAGAGATTTCCCAGACAGTCTTGTAG 8010 Query 80224 ACCTTACGAAGCTCCTCTGGAAT-GTCCAGATT--TTGCACACTGCCACCGTCCTTTACA 80280 | || || || || || || || |||| ||| ||||||||||| | | Sbjct 8011 AGTTTCTTGAGATCATCAGGGATAGTAGGGATTTCTTGTACACTGCCACCATGAGCAATC 8070 Query 80281 ATTTGATTTTTCAATTCAGACG-TCCAGACACCAAGCTTGTGCAGATCTTTCACAAGGTG 80339 || ||| || | | | || |||||| |||| ||||| ||||| |||| ||| || Sbjct 8071 ATCATATTCTTGAGGT-TGTCGCTCCAGAGACCACGCTTGACAAGATCGTTCAAAAGATG 8129 Query 80340 CTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGATACAGGTTTGTAGTGTA 80399 | ||| | || || || || || ||||| ||| | ||| | || || Sbjct 8130 TTGGTTGACCACTTGGAATTCACCACTCTGGACACGACGGGTATAGATGTTACTTGTATA 8189 Query 80400 AGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGGGCC 80459 ||| ||||| || |||| || | ||| ||| || || || || ||||| || | Sbjct 8190 AGGTTCAAAGCATTCTGTGTTACCCAAGATTTGACTGGTACTGGCTGTAGGCATAGGCGC 8249 Query 80460 GACCAACAGTGAATTCCGCAGGCCGTG 80486 | ||| ||||| || || | ||||| Sbjct 8250 TAACAAAAGTGAGTTACGAACACCGTG 8276 >seq205 Length=4540 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 30370 CCCGAACTCATTTTTGGGCACCTTTTGACAAGCTCCAACTACAACGACGAGGAGCAGCGC 30429 || ||||| |||||||| ||||| ||||| ||||||||||||||||| || || Sbjct 1872 CCTGAACTGATTTTTGGTCACCTCTTGACCTCTTCCAACTACAACGACGATGAAAAGAAG 1931 Query 30430 GTGACGGGTGGACGAAATGGCTACGGTGCAAAGCTCGCCAACGTTTTCAGTTCCCTATTC 30489 || || ||||| || || || || ||||| |||||| ||| | |||||| || |||| Sbjct 1932 GTCACTGGTGGTCGTAACGGTTATGGTGCCAAGCTCTGTAACATCTTCAGTACCGAATTC 1991 Query 30490 A 30490 | Sbjct 1992 A 1992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570290339331680