Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq2078 98.7 6e-16 seq2232 95.1 8e-15 >seq2078 Length=27221 Score = 98.7 bits (108), Expect = 6e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||||||||| | ||||| ||| || || || || || ||||| || ||||| Sbjct 1286 CCACCTCTAAGACGAAGCACCAGATGTAGTGTAGATTCTTTCTGGATGTTGTAGTCTGAT 1345 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | | || | ||||| ||||| || || || || || ||||| ||||| || || || Sbjct 1346 AAAGAGCGGCCATCTTCTAGTTGCTTTCCTGCGAAAATCAAACGTTGTTGATCTGGTGGA 1405 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| |||||||| |||||| | ||||| || | || || Sbjct 1406 ATACCTTCCTTGTCTTGAATCTTTTG-CTTAACGTTTTCAATTGAATCAGAGGATTCAAC 1464 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 ||| | ||| || |||||||| || | || || || ||||| ||||| || Sbjct 1465 TTCAAGGGTAATGGTTTTACCAGTGAGGGTCTTGACGAAAATTTGCATATT 1515 Score = 82.4 bits (90), Expect = 5e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| ||| || || || || || ||||| || ||||| || | || Sbjct 1067 AGACGAAGCACCAGATGTAGTGTAGATTCTTTCTGGATGTTGTAGTCTGATAGAGAGCGA 1126 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | |||||| |||||||| || | |||||||||||| || || | || || Sbjct 1127 CCATCTTCTAATTGTTTGCCGGCAAAAATAAGACGCTGTTGGTCTGGTGGAATACCTTCT 1186 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTT 34668 || ||| |||||||| || | | ||| | || | || ||||| | || Sbjct 1187 TTATCTTGAATCTTTTGCTTGACGTTTTCAATAGAATCAGAGGATTCGACTTCTAGTGTG 1246 Query 34669 ATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||| || || | || |||||||| || ||||| Sbjct 1247 ATTGTTTTGCCTGTGAGTGTCTTCACAAAGATTTGCAT 1284 >seq2232 Length=20840 Score = 95.1 bits (104), Expect = 8e-15 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||| || || || || ||||| || || || || ||| Sbjct 287 CCACCACGAAGACGAAGAACCAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCAGAA 346 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || | || | ||||| | ||||||||| ||||| || | ||| |||||||| || || Sbjct 347 AGAGAACGGCCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGTTGGTCTGGGGGR 406 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| ||||||||| || | || | ||| | ||| | || || Sbjct 407 ATACCTTCCTTGTCTTGGATCTTTTGCTTGA-CGTTCTCAATGGAGTCGGAGGATTCGAC 465 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || || || || || | || || || ||||||||||| Sbjct 466 TTCCAAAGTMATAGTCTTGCCAGTAAGAGTCTTAACRAAAATCTGCAT 513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314718806151662