Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq2232 178 3e-39 seq1425 141 2e-28 seq2078 136 9e-27 >seq2232 Length=20840 Score = 178 bits (196), Expect = 3e-39 Identities = 172/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| | ||||||||||||||| || |||||||| || || | || | Sbjct 520 ACGAAGACGAAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGA 579 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || ||||||| |||||| || ||||| || || ||||||||||| ||||| | || Sbjct 580 ACGGCCGTCTTCCAACTGCTTACCAGCGAAAATGAGACGTTGTTGGTCTGGAGGRATGCC 639 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||| ||||||||||| || || |||||||| | ||||| ||||||||| | Sbjct 640 TTCCTTGTCTTGGATCTTTTGCTTTACATTTTCGATAGAATCAGATGATTCAACCTCTAA 699 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || || |||||||| ||||| | ||||| Sbjct 700 GGTGATGGTTTTGCCAGTAAGAGTCTTGACAAAGATTTGCAT 741 Score = 161 bits (178), Expect = 2e-34 Identities = 168/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | |||||| || || ||||||||||| || || || | ||| | Sbjct 292 ACGAAGACGAAGAACCAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCAGAAAGAGA 351 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||| | || || || || |||||||| ||||||||||| || || | || Sbjct 352 ACGGCCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGTTGGTCTGGGGGRATACC 411 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||| ||||||||||| || ||||| || |||| ||| ||| ||| || || | Sbjct 412 TTCCTTGTCTTGGATCTTTTGCTTGACGTTCTCAATGGAGTCGGAGGATTCGACTTCCAA 471 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || ||||| || || |||||||| || || | |||||| Sbjct 472 AGTMATAGTCTTGCCAGTAAGAGTCTTAACRAAAATCTGCAT 513 Score = 159 bits (176), Expect = 8e-34 Identities = 171/226 (76%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | |||||| || || ||||||||||| || || || | ||| | Sbjct 748 ACGAAGACGAAGAACCAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCAGAAAGAGA 807 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||| | || || || || |||||||| ||||||||||| || || | || Sbjct 808 ACGGCCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGTTGGTCTGGGGGGATACC 867 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||| ||||||||||| || ||||| || |||| ||| ||| ||| || || | Sbjct 868 TTCCTTGTCTTGGATCTTTTGCTTGACGTTCTCAATGGAGTCGGAGGATTCGACTTCCAA 927 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTA 211118 |||||| ||||| || ||||| ||||| || || | ||||| ||| Sbjct 928 AGTGATGGTCTTACCAGTGAGGGTCTTAACGAAAATTTGCATGTTA 973 >seq1425 Length=32788 Score = 141 bits (156), Expect = 2e-28 Identities = 132/168 (79%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | |||||| || || || ||||||||||| || || | ||| | Sbjct 31188 ACGAAGACGGAGAACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCRGAAAGAGA 31247 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||| ||||| || || |||||||| ||||||||||| || |||| || Sbjct 31248 ACGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGTTGTTGGTCTGGGGGAATACC 31307 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT 211060 ||||||||| || |||||||| || || || || |||||||||||||| Sbjct 31308 TTCCTTGTCTTGAATCTTTTGCTTGACATTGTCAATGGTGTCAGAGCT 31355 >seq2078 Length=27221 Score = 136 bits (150), Expect = 9e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || || || || ||||| |||||||| || || | | | | |||||| Sbjct 1301 AGCACCAGATGTAGTGTAGATTCTTTCTGGATGTTGTAGTCTGATAAAGAGCGGCCATCT 1360 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || ||||| |||||||| || | |||||||| || || |||| ||||||||||| Sbjct 1361 TCTAGTTGCTTTCCTGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCCTTGTCT 1420 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || |||||||| || |||||||| || | |||||| |||||| || || || || || Sbjct 1421 TGAATCTTTTGCTTAACGTTTTCAATTGAATCAGAGGATTCAACTTCAAGGGTAATGGTT 1480 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || ||||| ||||| || || | ||||| || Sbjct 1481 TTACCAGTGAGGGTCTTGACGAAAATTTGCATATT 1515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159110207499110