Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2078 145 5e-30 seq2232 125 5e-24 >seq2078 Length=27221 Score = 145 bits (160), Expect = 5e-30 Identities = 159/210 (76%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 23606 TTAAA-ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGAC 23664 ||||| ||||| |||||||| || |||||||| || ||||| || || || |||||||| Sbjct 1518 TTAAATATGCAAATTTTCGTCAAGACCCTCACTGGTAAAACCATTACCCTTGAAGTTGAA 1459 Query 23665 TCCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCA 23724 ||| | || | |||||| | || ||||| ||| ||||| |||||| | || ||| Sbjct 1458 TCCTCTGATTCAATTGAAAACGTTAAGCAAAAGATTCAAGACAAGGAAGGTATTCCACCA 1399 Query 23725 GATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGAT 23784 |||||||| ||||| || || || || || ||||| ||||| | ||| ||||| || Sbjct 1398 GATCAACAACGTTTGATTTTCGCAGGAAAGCAACTAGAAGATGGCCGCTCTTTATCAGAC 1339 Query 23785 TACAACATACAAAAAGAGTCCACATTACAT 23814 |||||||| || ||||| || ||| ||||| Sbjct 1338 TACAACATCCAGAAAGAATCTACACTACAT 1309 Score = 138 bits (152), Expect = 8e-28 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || || ||||| || ||||| ||||| || ||||| || ||| | Sbjct 1284 ATGCAAATCTTTGTGAAGACACTCACAGGCAAAACAATCACACTAGAAGTCGAATCCTCT 1225 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| | || ||||| ||| || ||||||||| | || ||||| ||| Sbjct 1224 GATTCTATTGAAAACGTCAAGCAAAAGATTCAAGATAAAGAAGGTATTCCACCAGACCAA 1165 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||||||||||||| | ||||| | ||| || || || |||||| Sbjct 1164 CAGCGTCTTATTTTTGCCGGCAAACAATTAGAAGATGGTCGCTCTCTATCAGACTACAAC 1105 Query 23791 ATACAAAAAGAGTCCACATTACAT 23814 || || ||||| || ||| ||||| Sbjct 1104 ATCCAGAAAGAATCTACACTACAT 1081 >seq2232 Length=20840 Score = 125 bits (138), Expect = 5e-24 Identities = 162/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 23597 ATTAATTACTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCG 23656 ||||| || |||| ||||| ||||||||||| |||||||| || || || |||||| | | Sbjct 983 ATTAACTAGTTAACATGCAAATTTTCGTTAAGACCCTCACTGGTAAGACCATCACTTTGG 924 Query 23657 AAGTTGACTCCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTG 23716 |||| || ||| | ||| | |||| | | || ||||| || ||||| |||||| Sbjct 923 AAGTCGAATCCTCCGACTCCATTGAGAACGTCAAGCAAAAGATCCAAGACAAGGAAGGTA 864 Query 23717 TACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTT 23776 | || ||||| ||||| ||| | || ||||| || |||||| | ||||| | || || Sbjct 863 TCCCCCCAGACCAACAACGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGCCGTTCTC 804 Query 23777 TAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTT 23820 | || ||||| || |||||||| || || | || || ||| Sbjct 803 TTTCTGACTACAATATCCAAAAAGAATCTACCCTTCACTTGGTT 760 Score = 102 bits (112), Expect = 6e-17 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| ||||| || || || || || || || ||| | ||||| || ||| | Sbjct 513 ATGCAGATTTTYGTTAAGACTCTTACTGGCAAGACTATKACTTTGGAAGTCGAATCCTCC 454 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||| | |||| | | || ||||| || ||||| |||||| | || ||||| ||| Sbjct 453 GACTCCATTGAGAACGTCAAGCAAAAGATCCAAGACAAGGAAGGTATYCCCCCAGACCAA 394 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || ||||| || |||||| | ||||| | || || | || ||||| Sbjct 393 CAACGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGCCGTTCTCTTTCTGACTACAAT 334 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || |||||||| || || | || || ||| Sbjct 333 ATCCAAAAAGAATCTACCCTTCACTTGGTT 304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337998007749512