Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq2381 246 3e-60 >seq2381 Length=15399 Score = 246 bits (272), Expect = 3e-60 Identities = 563/840 (67%), Gaps = 18/840 (2%) Strand=Plus/Plus Query 4259 TTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTC 4318 |||||| || || || ||||| || ||||| || || ||||||| | ||||| | || Sbjct 10618 TTGGTAGTCAGAAACACGCTTCTCAAAGAAGTTGGTCTTGCCTTGAAGAGAAATCATGTC 10677 Query 4319 CATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAA 4378 ||| |||||||| || ||||| || ||||| || ||| | || || || | ||| Sbjct 10678 CATGAAATCAAAGGGGTTAGTGGCATTGTAGATCTTATCAAAGCCAAGGGCAACCATCAA 10737 Query 4379 TCGGTCAGCTACAAATTCTATATACTGGCTCATGAG-TTCGCAGTTAATTCCAATTAATC 4437 || || || || ||||| || || |||| ||| || || || ||| || ||||| || Sbjct 10738 ACGATCGGCGACGAATTCAATGTATTGGCACATAAGCTTAGC-GTTCATACCAATCAAGT 10796 Query 4438 TCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATAT 4497 | ||||||| || | ||||| || |||||||| ||| || || || || || Sbjct 10797 TGACAGGTAAAGCATCAGTCAAGAATTCTTGTTCAATACCAACAGCCTCAACAATGATGC 10856 Query 4498 CTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAAT 4557 || || || ||| || | || | || ||||| | ||| ||||| | Sbjct 10857 TCTTGATACGTTCGGCAGAAGGAATCTTCTTGAGGTGAGTGAACAAGAGACAAGCAAAGT 10916 Query 4558 CACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTA 4617 || || | |||||| || | | || ||||||||||| || || || || ||||| | Sbjct 10917 CAGTGTGAAGACCTTCATCACGACAGATAAGTTCGTTAGAGAAAGTCAAACCAGGCATGA 10976 Query 4618 AACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTA 4677 ||| | ||| || ||||| || |||| ||||||||| ||||| ||||| || ||||| | Sbjct 10977 GACCACGCTTCTTGAGCCAGAAGATAGAGGCAAATGAACCAGAGAAGAAGATACCTTCGA 11036 Query 4678 CGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTA 4737 | || ||||| || || ||||| | || || | | || | ||||| || | Sbjct 11037 CAGCAGCAAAGGCAACCAATCGCTCAGCAAAAGA---GTCGTTACCAGAGATCCACTTGA 11093 Query 4738 ATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA--ATTT 4795 ||||||| | || || ||| | || ||||| || | ||||| | ||| | || | Sbjct 11094 ATGCCCAATCTGCCTTACGCTTGATACAGGGAATGGTTTCGATAGCATCAAACAACATCT 11153 Query 4796 ACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATG 4855 ||||| | | | |||| || || ||||| || | | || || |||| | ||| Sbjct 11154 CCTTTTCTTGATT--ATCTTTGATGTAGGTGTCAATCAACAAACTGTAGGTTTCGGCATG 11211 Query 4856 TATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 || || || |||||||| || || || || || ||| | ||||| | | | ||||| Sbjct 11212 GATGTTCTCAATAGCAATTTGGAAACCATAGAAACATTTGGCTTCAGGGATCTTTACTTC 11271 Query 4916 GTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGT---CACTGGCTGCAAAAAA 4972 | ||| || ||| || |||||||| || |||| ||| | ||||| ||||| || Sbjct 11272 ATCACAGAAGTTTTGAACCAAGTTTTCATTGACTACACCATCAGCACTG---GCAAAGAA 11328 Query 4973 CGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTT---CCAGTGGGG 5029 ||||| ||| |||| || ||| | |||||| || | ||| || ||| | | | Sbjct 11329 GGCCAAGACACGAGAGATGAAGAATCGTTCGTTGCTGTTCATTTTGTTCTCCCAATCGTG 11388 Query 5030 CAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTA 5089 || || | || |||| ||||||| |||||||||| || ||||| || |||||||| Sbjct 11389 TTGGTCCTTGGACAAGTCAATTTCTTCAGCAGTCCAAAAGGAAGCTTCAGCCTTTTTGTA 11448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427034954067062