Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq244 495 5e-135 seq2381 215 7e-51 seq1825 120 4e-22 >seq244 Length=4003 Score = 495 bits (548), Expect = 5e-135 Identities = 1336/2024 (66%), Gaps = 30/2024 (1%) Strand=Plus/Plus Query 76812 GTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTT 76871 ||||| | |||||||||||| || || |||||| ||| || ||||| ||||| ||| Sbjct 1116 GTACGCAAATAGTACATACCGGTCTTGAGACCCTTTTGCCAACCATAGAAGTGCATACTT 1175 Query 76872 GTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATG 76931 |||| ||| | | |||| || || || ||||||| ||||||||||| ||| Sbjct 1176 GTCAATTTACCAAAGTTAGGTTCAGCAATGAAGATATTCAAACTTTGACTTTGATCAATG 1235 Query 76932 AAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTT 76991 |||| || | |||||| ||||| | | | || ||| | |||||| | ||| Sbjct 1236 TAAGCACCACGATCAGCAGCCATATCAACCAATGTACGCTGACTCAATTCCCAGACTGTT 1295 Query 76992 TTGAAAACTTGTTTGATATCATCTGGAAGGTTTGTA---TTTTGAATGGAACCACCATCT 77048 ||| | | | || | | | |||| || | ||||| | ||||||||||| Sbjct 1296 TTGTAGATGTCCTTCAACTTTTGAGGAATACCTGGAATGTTTTGCACTGAACCACCATCA 1355 Query 77049 GATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGG 77108 || || || | ||||| | |||||| |||||||| | | || ||| | | | | Sbjct 1356 GACATGATCATGTTCTTGACATCATCGTTCCACAAACCCATTTCAACCAAATCCTTCAAG 1415 Query 77109 AGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTG 77168 || || || || ||||| ||||| |||| | || | |||||| || | || | Sbjct 1416 AGCCATGGGTTGACAATTTGGAATTCGCCAGCAAGAACACGACGAGTATAGAGGTTGGAG 1475 Query 77169 GTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATA 77228 || || ||||| | | |||||||| ||||| ||||||| |||||||||||||||||| Sbjct 1476 GTGTAAGGTTCGAAACATTCATTGAAACCCAAGATTTGAGAGGTAGAAGCAGTTGGCATA 1535 Query 77229 GGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTC 77288 || || ||||| | || | | ||||||| ||||| || || || | | Sbjct 1536 GGAGCAACCAAGAGTGAGTTACGAACACCATGTTGAGCAATTTTTTCCTTGAGCTTAACC 1595 Query 77289 CAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTA 77348 |||||||| || || | || |||| ||| | ||| ||||| | | || || Sbjct 1596 CAATCCCAGAGGTCAGTGGGAGTGACATTCCACATATCATATTGCAATACACCCTTGGA- 1654 Query 77349 GCATATGAT--CCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCG 77406 || | || || ||| |||||||| || | | |||||| || || ||| | Sbjct 1655 -CACAGGACTGCCGGGATAGGTTTCATAGTAACCCTTTTCTTCAGCCAGCTCGCAAGAAG 1713 Query 77407 CTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAA 77466 |||| || || ||| ||| |||||||| ||||| | ||||||| | | |||||| Sbjct 1714 CTTCTAAAGCAGCGTGATAGATTGTTTCAAAAATTTGAATATTGAGTTGCTTAGCTTCAG 1773 Query 77467 TACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATAC 77526 | ||| || | | | | | | ||||| | ||||| | || ||||| || | || Sbjct 1774 GAGAATCGAAAGCAAACTTCATTAACATAAATGTGTCTGCGAGACCTTGAACACCTAGAC 1833 Query 77527 CAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGT 77586 | ||||| | || | ||| || || || |||||| | ||||||||| || || | Sbjct 1834 CGATAGGGCGGTGACGCTTGTTTGAGCGTTCAGCTTCAATGACAGGATAATAGTTGATAT 1893 Query 77587 CTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAAT 77646 | || || ||||| | |||||| | ||||||||| || || | | || | || | Sbjct 1894 CGATGATCTTATTCAAGTTTCTAGTGATTACTTTAACGACATCATGCAACTTCTGGAAGT 1953 Query 77647 CAAATCTTCCA---TCTATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTG 77703 | | ||| || | | |||||| || |||||| || || || | ||||| || | Sbjct 1954 CGTAACTTTCACGGTTGACAACAAAGGTGGGCAAAGCAATGGAAGCCAAGTTACAGACAG 2013 Query 77704 CTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAG 77763 | || |||| || | | | |||| | || || ||||| | |||||||| ||||||| Sbjct 2014 CAACTTCATCAGGGCTAGAGTATTCAACAATTTCTGTACACAAGTTACTACACTTGATAG 2073 Query 77764 TGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAG 77823 | |||| ||||| ||||| |||||| | || || | |||||||| || || || ||| Sbjct 2074 TACCCAAGTTTTGCTGGTTACTCTTTCTGTTACAGGCATCCTTATAGAGCATGAATGGAT 2133 Query 77824 TCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAG 77883 | ||||||||| | || | ||| | |||| | ||| | | || || || | Sbjct 2134 TACCGGTTTCAGTTTGAGCTTCAAGGATAGCATACCACAATTTTTGTGCCTTGATTGTTT 2193 Query 77884 ATTTGTATC-GCCTCTCTCTTTCATA--TTGAGTATATAGCCGTTCAAATTCATCTCCCC 77940 | | || |||| || ||||||| || ||||| || |||||||||| |||| Sbjct 2194 CTCTAGCTCTGCCTTCCT-TTTCATACTTTTCGTATAATGCAA--CAAATTCATCACCCC 2250 Query 77941 AAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCT 78000 | || ||| | |||||| |||||| || || | ||| ||||| ||||||| || Sbjct 2251 ATACTTCACAAAGTCCAGGAGCTTCATTAGGACAGAACAAGGACCATTCACCATTGTCAC 2310 Query 78001 TAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTAT 78060 || || | ||| ||||||||||||| ||| |||||| || | || || | |||| Sbjct 2311 GTACACGCTCCATGAAGAGATCAGGTACCCAAAGAGCATAGAACAAGTCACGAGCTCTAA 2370 Query 78061 GTTCTTCATTTCCTGTATTCTTTTTAAGATC-GAGAAACTCCATAATATCAGAATGCCAT 78119 ||| || || || |||||| | | ||| ||||| | | |||||||| |||||| Sbjct 2371 TTTCATCTTTACCAAAGTTCTTTCTCAAATCTAAGAAAGT-GAAAATATCAGGGTGCCAT 2429 Query 78120 GGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTG 78179 ||||| | || || || | | || || || || ||||| |||||||| | ||| | Sbjct 2430 GGTTCCAAGTACATAGCAAAGGCACCGGGACGCTTGTTACCACCCTGATCAACATAACGA 2489 Query 78180 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCA 78239 || || || || | || | |||||| || | || || ||||| || || || ||| Sbjct 2490 GCAGTATTGTTGAAGACACGCAACATGGGCAAAAGGCCATTAGAATAACCGTTAGTACCA 2549 Query 78240 GAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATC 78299 | ||||||| ||| | || ||||| || | | | || || || || || || Sbjct 2550 GCAATATAAGAGCCATTGGCACGAATGTTGTGCACGTTCAAACCGATACCACCAGCAGTC 2609 Query 78300 TTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATC 78359 ||||| ||| |||| ||| ||| || || ||||||||||| || ||| |||||| || Sbjct 2610 TTAGAAATTTGAGCACAAATTTTTAAGGTTTCGTAGATACCTTCGATAGAATCATCCTTC 2669 Query 78360 AT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGT 78418 || || || ||| || || |||||||||| || || ||| || ||||| || | || Sbjct 2670 ATAGTCAACAAG-AAGCAAGAAGACATTTGAGGACGAGGAGTACCAGCATTGAAAAGAGT 2728 Query 78419 CGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTC 78478 ||| ||||| ||||| | |||||| | || |||||||| ||||| || | || Sbjct 2729 AGGACTGGCATGAGTAAAGTAACGTTCAGACATAAGGTTGTATGTCTCAATGGCGGCATC 2788 Query 78479 TATGTCCCATTG--ATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCA 78536 || | | ||| |||||| || || || |||||||| | || ||| || ||||||||| Sbjct 2789 GATAT--CGTTGCCATGAATACCAACAGCAACACGCATGATCAAATGTTGTGGTCTTTCA 2846 Query 78537 ACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAG 78596 | |||| ||| || || | |||||| || || | || || |||||||| | Sbjct 2847 GCAACCTTACCATTGATCTTGAGCAAGTAAGAACGCTCGAGTGTCTTGAAACCAAAGAAA 2906 Query 78597 TTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGTTTATCTTTGTATTTGGTA 78656 |||||| || || | || || || || |||| || || || | |||| | Sbjct 2907 TTGTATTTGAAATCACGATCATAGATGATGGCAGAGTTAAGACGGTC--AGCGTTTGCCA 2964 Query 78657 --ACAATATCCATGACAGTAGTT-GAAATAATAGGAGATCGTACACCATTTTTAGGATTA 78713 ||||||| ||||| | || | || ||||| || | || | ||||| || Sbjct 2965 AGACAATAT-CATGAATATCCTTAGCAACCATAGGTGAGTGCTTGTCAGTCTTAGGGTTG 3023 Query 78714 ACATAGTTAAATAAATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAGA 78773 | ||||| ||| |||||| | || | | || | || || |||||||| |||| Sbjct 3024 ATGTAGTTGTATAGATCTTCAACGACTTGAGAGAAAACCTTCTTAGTTTCCTTATGTAAG 3083 Query 78774 TTAGATACAGCTATTCTTGCAGCTAGAATAGCATAATCAGGATG 78817 || || | ||| || | ||||| | | ||| ||||| || || Sbjct 3084 TTGGAAATAGCAATACGAGCAGCCAACAAAGCGTAATCTGGGTG 3127 >seq2381 Length=15399 Score = 215 bits (238), Expect = 7e-51 Identities = 555/838 (66%), Gaps = 17/838 (2%) Strand=Plus/Plus Query 47852 TTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 47911 ||| || ||| ||||| ||||| || || || || ||||||| | || || | || Sbjct 10618 TTGGTAGTCAGAAACACGCTTCTCAAAGAAGTTGGTCTTGCCTTGAAGAGAAATCATGTC 10677 Query 47912 CATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATCAG 47971 ||| |||||||| || ||| ||||| || || || | ||| || | | |||| Sbjct 10678 CATGAAATCAAAGGGGTTAGTGGCATTGTAGATCTTATCAAAGCCAAGGGCAACCATCAA 10737 Query 47972 TCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTT 48031 | ||| || |||||||| || ||| ||| | | | ||||| || || | || Sbjct 10738 ACGATCGGCGACGAATTCAATGTATTGGCACATAAGCTTAGCGTTCATACCAATCAAGTT 10797 Query 48032 AACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATCGA 48091 || |||| ||| || || | || |||||||| ||| ||||| || || || || | Sbjct 10798 GACAGGTAAAGCATCAGTCAAGAATTCTTGTTCAATACCAACAGCCTCAACAATGAT-GC 10856 Query 48092 TGTT-ACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAAAAT 48150 | || | ||| || || | | | || | |||| | ||| ||||| | Sbjct 10857 TCTTGATACGTTCGGCAGAAGGAATCTTCTTGAGGTGAGTGAACAAGAGACAAGCAAAGT 10916 Query 48151 CACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTA 48210 || |||||||||||||| | || || | ||||||||| || || | ||| ||||| | Sbjct 10917 CAGTGTGAAGACCTTCATCACGACAGATAAGTTCGTTAGAGAAAGTCAAACCAGGCATGA 10976 Query 48211 GTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTA 48270 | ||||| || |||||||| || || | || || || ||||| ||||| || ||||| | Sbjct 10977 GACCACGCTTCTTGAGCCAGAAGATAGAGGCAAATGAACCAGAGAAGAAGATACCTTCGA 11036 Query 48271 CGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTT----GTGTATCCACCGT 48326 | || ||||| || | || ||| | || | ||||| | | |||||| | Sbjct 11037 CAGCAGCAAAGGCAACCAATCGCTCAGCAAAA---GAGTCGTTACCAGAG-ATCCAC--T 11090 Query 48327 TG--TGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAA 48384 || ||||||||| ||||| ||| | ||| || || ||||| ||||||| ||| | | Sbjct 11091 TGAATGCCCAATCTGCCTTACGCTTGATACAGGGAATGGTTTCGATAGCATCAAACAACA 11150 Query 48385 AGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGT 48444 | ||||| | ||||||| | ||| || || || || | ||| || |||||| | Sbjct 11151 TCTCCTTTTCTTGATTATCTTTGATGTAGGTGTCAATCAACAAACTGTAGGTTTCGGCAT 11210 Query 48445 GAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCT 48504 | || || ||||| || || || || || || |||||| | ||||| | ||||| ||| | Sbjct 11211 GGATGTTCTCAATAGCAATTTGGAAACCATAGAAACATTTGGCTTCAGGGATCTTTACTT 11270 Query 48505 CCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATG 48564 | ||| || || | |||| || ||||| |||| |||||| | ||||| || | Sbjct 11271 CATCACAGAAGTTTTGAACCAAGTTTTCATTGACTACACCATCAGCACTGGCAAAGAAGG 11330 Query 48565 CTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATT---CCAGTCATTGA 48621 | || ||| | || || || ||||||| ||| ||| || ||| || | Sbjct 11331 CCAAGACACGAGAGATGAAGAATCGTTCGTTGCTGTTCATTTTGTTCTCCCAATCGTGTT 11390 Query 48622 TATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATA 48679 || || || | || | ||||||||| |||||||| || || || || ||||| || Sbjct 11391 GGTCCTTGGACAAGTCAATTTCTTCAGCAGTCCAAAAGGAAGCTTCAGCCTTTTTGTA 11448 >seq1825 Length=31147 Score = 120 bits (132), Expect = 4e-22 Identities = 294/441 (67%), Gaps = 5/441 (1%) Strand=Plus/Plus Query 76803 GCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 76862 |||||| |||| | || || ||||| || || || | |||| ||||| | |||||| Sbjct 7816 GCGGGTCTTGTTCTAAGGTAATACATGCCTGTCTTCAAACCCTTCTTCCATGCATAGAAA 7875 Query 76863 TGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTT 76922 ||||| ||||| || |||| |||| |||||| || | ||||| || || | Sbjct 7876 TGCATAGAGGTCAGCTTACCATAATTAGGTTCGGCTGTAAACAAGTTCATAGATTGGGAT 7935 Query 76923 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 76982 ||||| || ||||| || | |||||| ||||| | ||||| || |||||| |||||| Sbjct 7936 TGATCAATAAAAGCACCACGATCAGCAGCCATATCAATAATTGTTCTTTGAGAGATTTCC 7995 Query 76983 CAAATAGTTTTGAAAACTTGTTTGATATCATC-TGGAAGGTTTGTATT--TTGAATGGAA 77039 || | ||| ||| | | || |||| |||||| ||| || | ||| ||| | Sbjct 7996 CAGACAGTCTTGTAGAGTTTCTTGAGATCATCAGGGATAGTAGGGATTTCTTGTACACTG 8055 Query 77040 CCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAA- 77098 ||||||| | || || ||||||| | | || |||| | | || || || Sbjct 8056 CCACCATGAGCAATCATCATATTCTTGAGGTTGTCGCTCCAGAGACCACGCT-TGACAAG 8114 Query 77099 AACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTA 77158 | | | | ||||| | || || | ||| ||||| ||| | || | ||| || || Sbjct 8115 ATCGTTCAAAAGATGTTGGTTGACCACTTGGAATTCACCACTCTGGACACGACGGGTATA 8174 Query 77159 AATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGC 77218 || ||||| ||||| ||||| | |||| |||| ||||| |||||| ||| || Sbjct 8175 GATGTTACTTGTATAAGGTTCAAAGCATTCTGTGTTACCCAAGATTTGACTGGTACTGGC 8234 Query 77219 AGTTGGCATAGGTGCCACCAA 77239 || |||||||| || | ||| Sbjct 8235 TGTAGGCATAGGCGCTAACAA 8255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694644365024960