Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq2232 125 2e-23 seq2078 122 2e-22 seq1425 87.8 4e-12 >seq2232 Length=20840 Score = 125 bits (138), Expect = 2e-23 Identities = 152/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| ||||| ||||||||||| ||||| || | | || | |||||||||| Sbjct 307 CAAG-TGAAGGGTAGATTCTTTTTGGATATTGTAGTCAGAAAGAGAACGGCCATCTTCTA 365 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||| || || |||||||| | || ||||| | | || |||||||| ||||| | Sbjct 366 ATTGTTTACCAGCAAAGATAAGACGTTGTTGGTCTGGGGGRATACCTTCCTTGTCTTGGA 425 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | ||||| ||||| |||| | | ||| || || ||||| | ||| ||||| |||| Sbjct 426 TCTTTTGCTTGACGTTCTCAATGGAGTCGGAGGATTCGACTTCCAAAGTMATAGTCTTGC 485 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || |||||||| || || | |||||| Sbjct 486 CAGTAAGAGTCTTAACRAAAATCTGCAT 513 Score = 118 bits (130), Expect = 2e-21 Identities = 154/212 (73%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| ||||| ||||||||||| ||||| || | | || | |||||||||| Sbjct 763 CAAG-TGAAGGGTAGATTCTTTTTGGATATTGTAGTCAGAAAGAGAACGGCCATCTTCTA 821 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||| || || |||||||| | || ||||| | | ||| |||||||| ||||| | Sbjct 822 ATTGTTTACCAGCAAAGATAAGACGTTGTTGGTCTGGGGGGATACCTTCCTTGTCTTGGA 881 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | ||||| ||||| |||| | | ||| || || ||||| | ||| || || || | Sbjct 882 TCTTTTGCTTGACGTTCTCAATGGAGTCGGAGGATTCGACTTCCAAAGTGATGGTCTTAC 941 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTTA 152108 | ||||| ||||| ||||| | ||||| ||| Sbjct 942 CAGTGAGGGTCTTAACGAAAATTTGCATGTTA 973 >seq2078 Length=27221 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||| || ||||| ||||| ||||||||||| || | || || | |||||| Sbjct 1073 AGCACCAGATGTAGTGTAGATTCTTTCTGGATGTTGTAGTCTGATAGAGAGCGACCATCT 1132 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 |||| ||| ||||| || ||||| | ||| ||||| | | || ||||| || ||| Sbjct 1133 TCTAATTGTTTGCCGGCAAAAATAAGACGCTGTTGGTCTGGTGGAATACCTTCTTTATCT 1192 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| ||||| ||||| | || | || || || ||||| || || || ||| Sbjct 1193 TGAATCTTTTGCTTGACGTTTTCAATAGAATCAGAGGATTCGACTTCTAGTGTGATTGTT 1252 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| ||||| |||||||| |||| ||||| Sbjct 1253 TTGCCTGTGAGTGTCTTCACAAAGATTTGCAT 1284 Score = 111 bits (122), Expect = 4e-19 Identities = 156/217 (72%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||| || ||||| ||||| ||||||||||| || | ||||| | |||||| Sbjct 1301 AGCACCAGATGTAGTGTAGATTCTTTCTGGATGTTGTAGTCTGATAAAGAGCGGCCATCT 1360 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 ||||| ||||| || ||||| || | | || || || | | || |||||||| | Sbjct 1361 TCTAGTTGCTTT--CCTGCGAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCCTTGT 1418 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 ||||||| ||||| || || | || | || || || |||||||| ||||| | Sbjct 1419 CTTGAATCTTTTGCTTAACGTTTTCAATTGAATCAGAGGATTCAACTTCAAGGGTAATGG 1478 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 |||| || ||||| ||||| ||||| | ||||| || Sbjct 1479 TTTTACCAGTGAGGGTCTTGACGAAAATTTGCATATT 1515 >seq1425 Length=32788 Score = 87.8 bits (96), Expect = 4e-12 Identities = 112/154 (73%), Gaps = 1/154 (1%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| ||||| || |||||||||||||| || | | || | |||||||| | Sbjct 31203 CAAG-TGAAGGGTAGATTCCTTTTGGATGTTGTAGTCRGAAAGAGAACGACCATCTTCCA 31261 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || || |||||||| | || ||||| | | || |||||||| ||||||| Sbjct 31262 ATTGCTTACCAGCAAAGATAAGACGTTGTTGGTCTGGGGGAATACCTTCCTTGTCTTGAA 31321 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT 152050 | ||||| |||||| | || | | |||| || || Sbjct 31322 TCTTTTGCTTGACATTGTCAATGGTGTCAGAGCT 31355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153779199712194