Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq137 196 1e-44 seq2232 192 1e-43 seq2078 159 7e-34 seq2204 129 1e-24 seq2444 123 5e-23 seq1425 116 8e-21 seq2040 89.7 1e-12 >seq137 Length=45107 Score = 196 bits (216), Expect = 1e-44 Identities = 747/1155 (65%), Gaps = 52/1155 (5%) Strand=Plus/Plus Query 315715 TCGCGGTCCACAAAGTTGGTCGGCTCATCAAGAACGATGACGTGGGGTTGTTGCCATAGA 315774 || || || | | |||| || || ||||| | || | | ||| |||| | ||| | | Sbjct 41158 TCACGATCAAGATAGTTAGTAGGTTCATCCAAGACAAGCATGTGTGGTTTGTTCCACATA 41217 Query 315775 GCGGCGCCGATAACGAGCTTTAGTTTTTGCCCACCAGACAGTCCACGGATGCGAGAATGA 315834 || || || ||||| | ||| | ||||| |||||||| || ||||| ||| |||||||| Sbjct 41218 GCTGCACCAATAACCAACTTGACCTTTTGACCACCAGAAAGACCACGAATGTGAGAATGA 41277 Query 315835 GTGGTAAATTCTGGGTCAAGGCCAACATTAGCCATATGTTCTTCCACGTTCTTCGCGGTC 315894 | | ||| || || ||||| ||||| | | | ||| | ||| | | ||| || ||| Sbjct 41278 GAAGCAAACTCGGGCTCAAGTCCAACTTCCTCTAGATGCTTTTCGATTTCCTTTGCCGTC 41337 Query 315895 AGTGGTTTAAACATACCGTTTGCAAC--GGCTTCTTTGGTGTCAATGTCGTTCAGGA--- 315949 | || || | ||| || | ||| ||| || | ||| | ||| | | Sbjct 41338 AACGGACGCAAGAGACC-----CATCTTGGCAGCTTCGGC-TGAATCTACTTCGGCAATC 41391 Query 315950 -TCTTACCAAA-CCCATACTCCTCGAGACGTTCGCGGGACATCCACTGGGTAGTCTCG-T 316006 |||| ||||| ||||| || || || || || || ||||| | || | | | Sbjct 41392 TTCTTGCCAAAACCCATG-TCTTCTAGCTTTTGACGTGATATCCAAGTGTTATCCACACT 41450 Query 316007 CGTTTTTCC-ACTGAA----CTTCATACTCATACGACTTCTTGAGTTTGCGTCGCCCAAG 316061 || || || || |||| || |||||||||| |||||| || || ||||| | Sbjct 41451 CGAACGGCCCACCCAAGAGACTTCGTATTCATACGACTGCTTGAGCTTACGACGCCCGAC 41510 Query 316062 GATCTTGTCAAGGATTTTCTTCACACCGTCAACAACTTTCGTTTCATACATC---TTCTT 316118 || | || | | || ||||||||| || ||| | | ||| ||||| Sbjct 41511 AATATCCTCCACCACACGTTTTTCACCGTCAATCACAAACGTCTGTTCCATGACTTTCTT 41570 Query 316119 CAGTTCTTCGTCATTTGTCTTCCTAGAAACGACGTCAAGTGATTCTTTGTCTTCACCGGA 316178 | |||| |||| | | | | ||| ||| ||| ||||||||||| Sbjct 41571 ATTTGATTCGGCATT---CATTCGATCGTTCTTGTCGAGTTCTTCACGGTCTTCACCGGT 41627 Query 316179 AGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGATGATCCTCGATGTGGTG 316238 |||||||||||||| ||||||| || || ||| || || || | || || ||||| Sbjct 41628 TGCATAACGCCATTGAATGTACTCGTTAGGAGTCGAATCCAGGTGTTTTTCAATATGGTG 41687 Query 316239 GAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCAAACGCTACCG-- 316296 ||| |||||||| || || || |||| ||||| || ||||||||||| || |||| Sbjct 41688 GAAGGCGTGCTGGGCTACATAGGCAATACGCAAGTTGGGATGCTTCCATACAGTACCCAC 41747 Query 316297 TTAGTAGTTTCCATCTGCCCTGTTAGCACTTTAATGAGAGTACTTTTTCCCGCGCCGTTT 316356 || | | ||| | || || || | || || || || ||||| || || || ||||| Sbjct 41748 TTCGGA--TTCAAGCTCGCCCGTCAACAGCTTTATCAGTGTACTCTTACCGGCACCGTTG 41805 Query 316357 TCACCCACGACACCGATCCTGGAGTTG--AGCGATACCTGGGCATTCACGTTGTCGAAGA 316414 ||| | |||| ||| | ||| || | ||| || | || || | | ||| Sbjct 41806 GGACCGATGACAGCGACAC--GAGATGCCAACGA-ACATTGGAATGA--GATATCGTT-- 41858 Query 316415 CCAGTT------TGTCCGTCCCAGGATACTTGAAACCCACCCCGCGAAGCTTCATGATGG 316468 ||||| || | || |||||||| | |||| | || | ||||| ||| | Sbjct 41859 -CAGTTGCTTCTTGGCAGTACCAGGATATTGGAAATCAACATTCTTCATCTTCAGGATAG 41917 Query 316469 CACGGTCCTTCGAAGTGATACCCTCGAGAAAGCCGGGTTCGGGGAATTTCCACGTAGTCT 316528 |||| ||||| | |||| ||||| ||| |||| |||||||||||| | ||||| Sbjct 41918 CACGTTCCTTGGTCTTGATGCCCTCAAGATAGCCAGGTTCGGGGAATCGAAAGACAGTCT 41977 Query 316529 TCGTCTCGGCGAGCGTGTAGTAACTTGCAGATTCGGGACGC---TTCTTCACGAATTCGG 316585 | | | || | ||||| |||| | | || || ||||| || ||||| | Sbjct 41978 GAGCTGCTCCCAGTGAATAGTAG---GCAGCTGCACGAGGCACCTTCTTGACAAATTCCG 42034 Query 316586 ACAGATTTCCTTTATACTTCTTCAGCTTCAGGTTGGGTTCGTAATGGATGATAGAAGTAC 316645 ||||||| || ||| ||||||||| ||| || |||||||| ||| ||||| Sbjct 42035 ACAGATTACCGCGATAACGCTTCAGCTTATAGTTACCCTCATAATGGATAATATCAGTAC 42094 Query 316646 AGACAGCATCGAGGAAACCAGAATCGTGTGATACAATCACACATGAAACGCCTTTTAGGT 316705 | ||| ||| | || ||||| |||||||| ||||| | | | ||| || || Sbjct 42095 ACACATGATCCAAAAATCCAGAGTCGTGTGAGACAATGATCGAAGTCACGGTCTTGAGAC 42154 Query 316706 TGACCAGATAGTCGATCAGCCAGCTCACATTCGACACAGAAAGATGGTTGGTCGGTTCGT 316765 | |||||||| |||||| |||||| |||| |||||||| || ||||||| Sbjct 42155 CCAACAGATAGTTCTCTAGCCAGGCCACATTGACCACATCCAGATGGTTAGTAGGTTCGT 42214 Query 316766 CAAGTAGTAGTAGCTTCGCGTCCAACAGCATAGCGCGTGCGAGAGCAAGCTTCATTTTCC 316825 | | || || | | || | || || ||| || || || | |||||||||||||||| Sbjct 42215 CCAACAGGAGAATATCGGCATTCATCAACATGGCACGAGCCAAGGCAAGCTTCATTTTCC 42274 Query 316826 ACCCCCCGGAAAGAG 316840 | || || || |||| Sbjct 42275 AGCCACCCGAGAGAG 42289 >seq2232 Length=20840 Score = 192 bits (212), Expect = 1e-43 Identities = 181/231 (78%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| |||| || | || |||||||||||| |||||||||| Sbjct 742 ACCACCACGAAGACGAAGAACCAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCAGA 801 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| | |||||||| |||| |||||| || |||||||| | |||||||||||| || Sbjct 802 AAGAGAACGGCCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGTTGGTCTGGGGG 861 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||| |||||||||||||||||| || ||| | || || | ||| || | |||||| Sbjct 862 GATACCTTCCTTGTCTTGGATCTTTTGCTTGACGTTCTCAATGGAGTCGGAGGATTCGAC 921 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||| | |||||| |||||||| || | ||||||||||| || ||||| || Sbjct 922 TTCCAAAGTGATGGTCTTACCAGTGAGGGTCTTAACGAAAATTTGCATGTT 972 Score = 190 bits (210), Expect = 4e-43 Identities = 178/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| |||| || | || |||||||||||| |||||||||| Sbjct 286 ACCACCACGAAGACGAAGAACCAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCAGA 345 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| | |||||||| |||| |||||| || |||||||| | |||||||||||| || Sbjct 346 AAGAGAACGGCCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGTTGGTCTGGGGG 405 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||| |||||||||||||||||| || ||| | || || | ||| || | |||||| Sbjct 406 RATACCTTCCTTGTCTTGGATCTTTTGCTTGACGTTCTCAATGGAGTCGGAGGATTCGAC 465 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| | ||| || ||||| || || | ||||||||| || |||||||| Sbjct 466 TTCCAAAGTMATAGTCTTGCCAGTAAGAGTCTTAACRAAAATCTGCAT 513 Score = 129 bits (142), Expect = 1e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| |||| || | ||| || || |||||||||||||||| Sbjct 514 ACCACCACGAAGACGAAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 573 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || | ||||| || || | || || || || || || | |||||||||||| || Sbjct 574 GAGAGAACGGCCGTCTTCCAACTGCTTACCAGCGAAAATGAGACGTTGTTGGTCTGGAGG 633 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || |||||||||||||||||| ||||| | ||||||| || || | ||| || Sbjct 634 RATGCCTTCCTTGTCTTGGATCTTTTGCTTTACATTTTCGATAGAATCAGATGATTCAAC 693 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||| || || || || | |||||| || || || ||||| Sbjct 694 CTCTAAGGTGATGGTTTTGCCAGTAAGAGTCTTGACAAAGATTTGCAT 741 >seq2078 Length=27221 Score = 159 bits (176), Expect = 7e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || ||||| |||||||||| || |||||| |||||||||||||| | Sbjct 1057 ACCTCCACGGAGACGAAGCACCAGATGTAGTGTAGATTCTTTCTGGATGTTGTAGTCTGA 1116 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || | ||| ||||| |||| |||||| |||||||| || | ||| |||||||| || Sbjct 1117 TAGAGAGCGACCATCTTCTAATTGTTTGCCGGCAAAAATAAGACGCTGTTGGTCTGGTGG 1176 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| || || ||||| |||||| || ||| | || |||| || || | |||||| Sbjct 1177 AATACCTTCTTTATCTTGAATCTTTTGCTTGACGTTTTCAATAGAATCAGAGGATTCGAC 1236 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| || ||||| || || || || | ||||| || || || ||||| Sbjct 1237 TTCTAGTGTGATTGTTTTGCCTGTGAGTGTCTTCACAAAGATTTGCAT 1284 Score = 159 bits (176), Expect = 7e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | || ||||| |||||||||| || |||||| |||||||||||||| | Sbjct 1285 ACCACCTCTAAGACGAAGCACCAGATGTAGTGTAGATTCTTTCTGGATGTTGTAGTCTGA 1344 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | | ||||||||| |||||||| || || || || |||||||||||||| || || Sbjct 1345 TAAAGAGCGGCCATCTTCTAGTTGCTTTCCTGCGAAAATCAAACGTTGTTGATCTGGTGG 1404 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| ||||||||||| |||||| || ||| | || || | || || | ||| || Sbjct 1405 AATACCTTCCTTGTCTTGAATCTTTTGCTTAACGTTTTCAATTGAATCAGAGGATTCAAC 1464 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||| || || || || ||||| || | ||||| ||||| || ||||| || Sbjct 1465 TTCAAGGGTAATGGTTTTACCAGTGAGGGTCTTGACGAAAATTTGCATATT 1515 >seq2204 Length=21180 Score = 129 bits (142), Expect = 1e-24 Identities = 311/463 (67%), Gaps = 16/463 (3%) Strand=Plus/Plus Query 43913 ATGTAGATGCTCTTGGTGTTCTGCGTTTGTTAGACGCAGTTCGTA-TAGCAGGTGTGAAC 43971 |||| ||||| || ||| || ||| ||||||| || ||||||| | || || | | Sbjct 6240 ATGTTGATGCACTCGGTACACTCCGTCTGTTAGATGCTGTTCGTACTTGC-GGCCTCTCC 6298 Query 43972 TCTCGGATTTGC------CAAGCGTCGACATCGGAGTTGTACGGAAAGGTTCAGGAGATT 44025 ||| || || ||||| || || || || ||||||||||||||| || | Sbjct 6299 GATCGTGTTCGCTTCTATCAAGCTTCTACTTCTGAATTGTACGGAAAGGTTGTCGAAACG 6358 Query 44026 CCTCAAACAGAAAGGACTCCGTTTTATCCCCGGAGTCCATATGGTGTGGCGAAGCTATAT 44085 ||||||| |||| || || || || || || || |||||||| || ||||| ||| Sbjct 6359 CCTCAAAAGGAAACCACGCCTTTCTACCCTCGTTCACCCTATGGTGTTGCAAAGCTTTAT 6418 Query 44086 GCCTATTGGAT--TTGTAAAAATTATCGCGAGTCGTATGGGATGTTCGTTTGTAATTCGA 44143 | ||||||||| |||| ||||| || || || |||| ||||| || ||| | Sbjct 6419 GGCTATTGGATCGTTGT--CAATTACCGTGAATCTTATGAGATGTATACATGCAATGGCA 6476 Query 44144 TTTGTTTCAATCACGAAAGTCCCAACAGAGGTCATCAGTTCGTGACTCGTAAAATCACGA 44203 || || ||||| ||| ||| | || | | || || || ||||| || || | Sbjct 6477 TTCTCTTTAATCATGAATCTCCTCGTCGTGGCCGTACCTTTGTCACACGTAAGATTACAA 6536 Query 44204 AAGCGGTTGCGAATATTTTCA-ACGGGAC-AGAAAAATGCATGTATCTAGGAAACATAGA 44261 | || ||||| ||| |||| ||||| || |||| ||||| | || || || || Sbjct 6537 ATGCTGTTGCTGATA--TTCATTTGGGACGTCAAGAATGTTTGTATTTGGGCAATATTGA 6594 Query 44262 CTCTAAAAGAGATTGGGGATATGCCTTGGATTATGTAGAAGCCATGTGGCTGATGTTGCA 44321 | | || | |||||||| |||| |||||| | |||| |||||||| ||| | || Sbjct 6595 CGCCAAGCGTGATTGGGGTCATGCTCGAGATTATATCGAAGGAATGTGGCTTATGCTTCA 6654 Query 44322 ACAAGACAGGTCAGACGACTACGTTATTGCAACTGGAAAGACG 44364 |||||| | | | ||||||| || | || || ||| | ||| Sbjct 6655 ACAAGAGAAGCCTGACGACTTTGTCTTAGCCACGGGAGAAACG 6697 >seq2444 Length=14139 Score = 123 bits (136), Expect = 5e-23 Identities = 256/381 (67%), Gaps = 0/381 (0%) Strand=Plus/Plus Query 316458 CTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGAAAGCCGGGTTCGGGGAATTT 316517 ||||| ||| ||||| ||||| | | ||||| ||||| || |||||||||||||| || Sbjct 195 CTTCAAGATAGCACGTTCCTTGGTCTTAATACCTTCGAGGAACCCGGGTTCGGGGAACTT 254 Query 316518 CCACGTAGTCTTCGTCTCGGCGAGCGTGTAGTAACTTGCAGATTCGGGACGCTTCTTCAC 316577 | | | | | | | || | ||||||| |||| ||| |||||| || Sbjct 255 GAAGGAGATTTGAGAAGCTTCAAGAGAGTAGTAAGAAGCAGCACGAGGAACCTTCTTGAC 314 Query 316578 GAATTCGGACAGATTTCCTTTATACTTCTTCAGCTTCAGGTTGGGTTCGTAATGGATGAT 316637 ||||||||| || || || || || ||| ||||| |||||||||||| || ||||| Sbjct 315 GAATTCGGAAAGGTTACCCTTGTAACGCTTGAGCTTGTAGTTGGGTTCGTAGTGAATGAT 374 Query 316638 AGAAGTACAGACAGCATCGAGGAAACCAGAATCGTGTGATACAATCACACATGAAACGCC 316697 | |||||| ||| | ||||||||| ||||| || ||||| | | | ||| Sbjct 375 GTCGGAACAGACGTGATCCAAGAAACCAGAGTCGTGRGAAACAATGATGGAGGTAACAGT 434 Query 316698 TTTTAGGTTGACCAGATAGTCGATCAGCCAGCTCACATTCGACACAGAAAGATGGTTGGT 316757 || || | || |||| || |||| || || ||| | ||||| || Sbjct 435 CTTAAGACCCAAGAGGTAGTTTTCCAACCAGGCAACGTTAACAACATCCAAGTGGTTAGT 494 Query 316758 CGGTTCGTCAAGTAGTAGTAGCTTCGCGTCCAACAGCATAGCGCGTGCGAGAGCAAGCTT 316817 ||||||||||| | || | | || | || || |||||| || || ||||| ||||| Sbjct 495 AGGTTCGTCAAGCAAGAGAATATCAGCATTCATCAACATAGCACGAGCAAGAGCGAGCTT 554 Query 316818 CATTTTCCACCCCCCGGAAAG 316838 ||| ||||| || || ||||| Sbjct 555 CATCTTCCAACCACCAGAAAG 575 >seq1425 Length=32788 Score = 116 bits (128), Expect = 8e-21 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || |||| || | || ||| ||||||||||||||||| | Sbjct 31182 ACCACCACGAAGACGGAGAACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCRGA 31241 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| | || ||||| || | ||| || || |||||||| | |||||||||||| || Sbjct 31242 AAGAGAACGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGTTGTTGGTCTGGGGG 31301 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGA 283042 |||||| ||||||||||| |||||| || || | || || ||||| || Sbjct 31302 AATACCTTCCTTGTCTTGAATCTTTTGCTTGACATTGTCAATGGTGTCAGA 31352 >seq2040 Length=28840 Score = 89.7 bits (98), Expect = 1e-12 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 22 TAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 78 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046701460472356