Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Choanephora_20cucurbitarum_20[genbank_20GCA_5F001683725.1_202016-07- 12] 2,814 sequences; 29,096,908 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq2381 174 2e-38 >seq2381 Length=15399 Score = 174 bits (192), Expect = 2e-38 Identities = 402/603 (67%), Gaps = 12/603 (2%) Strand=Plus/Plus Query 23343 ATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTATTAGTTTTAC 23402 ||| || || |||||||| ||||| ||||| | | | ||| ||||| || | || || Sbjct 10741 ATCGGCGACGAATTCAATGTATTGGCACATAAGCTTAGCGTTCATACCAATCAAGTTGAC 10800 Query 23403 TGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAATTAT----TT 23458 || | |||||| |||||| || |||||| |||||| || ||| || || Sbjct 10801 AGGTAAAGCATCAGTCAAGAATTCTTGTTCAATACCAACAGCCTCAACAATGATGCTCTT 10860 Query 23459 GAACAATAACTTCTTCACTAGGTGGATATTTTAAATACTTAAACAATAAACATGCAAAAT 23518 || || ||| || ||| | || | | | ||||| | ||| ||||| | Sbjct 10861 GA----TACGTTCGGCAGAAGGAATCTTCTTGAGGTGAGTGAACAAGAGACAAGCAAAGT 10916 Query 23519 CACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTA 23578 || || || |||||||| | || || | ||| ||||| || || || || ||||| | Sbjct 10917 CAGTGTGAAGACCTTCATCACGACAGATAAGTTCGTTAGAGAAAGTCAAACCAGGCATGA 10976 Query 23579 ATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAA 23638 || || || || | ||| || || | |||||||| || || ||||| ||||| || | Sbjct 10977 GACCACGCTTCTTGAGCCAGAAGATAGAGGCAAATGAACCAGAGAAGAAGATACCTTCGA 11036 Query 23639 CAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGAAATCCAttttt 23698 |||| |||||||| || | || | |||| | | ||| |||| ||||| || Sbjct 11037 CAGCAGCAAAGGCAACCAATCGCTCAGCAAAAGAGTCGTTAC---CAGAGATCCACTTGA 11093 Query 23699 ttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTTAAGAGAAAAG 23758 || ||||| ||||| || | ||| ||| ||||| || || | || | | Sbjct 11094 ATGCCCAATCTGCCTTACGCTTGATACAGGGAATGGTTTCGATAGCATCAAACAACATCT 11153 Query 23759 TTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAA 23818 ||||||| ||||||| | || || || ||||| | ||||| || |||| | ||| | Sbjct 11154 CCTTTTCTTGATTATCTTTGATGTAGGTGTCAATCAACAAACTGTAGGTTTCGGCATGGA 11213 Query 23819 TATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCAT 23878 | || ||||||||||| || || ||||| |||||| | ||||||| | | || |||| Sbjct 11214 TGTTCTCAATAGCAATTTGGAAACCATAGAAACATTTGGCTTCAGGGATCTTTACTTCAT 11273 Query 23879 TAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAG-CA 23937 | | || ||| | | || ||||| || || | ||||||| | |||||||| | || Sbjct 11274 CACAGAAGTTTTGAACCAAGTTTTCATTGACTACACCATCAGCACTGGCAAAGAAGGCCA 11333 Query 23938 AGA 23940 ||| Sbjct 11334 AGA 11336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521469656659600